Authoring, peer-review and
publication in one place, for
the first time!
Pensoft Journal System (PJS 2.0)
Lyubomir Penev
V...
The “Publishing Bottleneck
(in Biodiversity)”?
What is that?
Massive sampling/data gathering
„Dark species‟ increase
dramatically!
Rod Page, iPhylo blogspot, 12 April 2011
The paper/PDF impediment
… the burden or OCR, double-keying and
markup of paper/PDF literature
The “impact factor” pressure
The “peer review” pressure
Low uptake of open data publishing/sharing
Source: Wikipedia
Primary data
A solution?
Primary data
Publishing and sharing of primary data
RE-USE
of
CONTENT
Launch date
http://biodiversitydatajournal.com
Novel concepts
Authoring, reviewing and publishing in one
place, for the first time!
Detailed upfront markup!
“Small” data...
How we do that?
COMMUNITY PEER-REVIEW
(PENSOFT JOURNAL
SYSTEM 2.0)
COLLABORATIVE
ARTICLE AUTHORING
(PENSOFT WRITING
TOOL)
...
Novel work flows
Authoring
Peer-review and editorial manager
Publishing and dissemination
Article
templates
Classifications
Inivte a co-author
External links
Import tabular data
Template
Data
converted
into text
Compose plates
Pick up a reference
Cite a reference
Novel work flows
Authoring
Peer-review and editorial manager
Publishing and dissemination
Penso
Wri ng
Tool
(PWT)
Collabora ve
online wri ng
Authors
Penso
Journal
System
(PJS)
Editor
Public
Community
Closed
Revie...
Now imagine…
Consolidated Review Version
Novel work flow
Authoring
Peer-review and editorial manager
Publishing and dissemination
Article metadata
Download data
Map distributions
Taxon names and their usages
Taxon profile
Taxon profile
Tables and Figures
Tables and Figures
Tables and Figures
References
No author guidelines!
The tool will guide
you!
Authors do not need
to markup or
hyperlink anything!
PWT does this for you!
Embedded copyeditor?
Layout stage skipped!
LOW COST!
Why a new journal?
BDJ is not just a new journal
Neither it is a conventional data
journal!
A pilot work flow and infrastr...
Imagine how data
(if published in this way) can be re-
used…
… across different
domains….
XML on GitHub
I Open Access!
PLAZI
Implementation in other domains
welcome!
penev@pensoft.net
Drawings: slavenapeneva.com
Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0)
Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0)
Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0)
Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0)
Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0)
Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0)
Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0)
Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0)
Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0)
Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0)
Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0)
Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0)
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Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0)

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Pensoft Journal System (PJS 2.0) presented by Lyubomir Penev at the OASPA Conference, Riga, 18-20 Sep 2013

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Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0)

  1. 1. Authoring, peer-review and publication in one place, for the first time! Pensoft Journal System (PJS 2.0) Lyubomir Penev ViBRANT OASPA Conference, Riga, 18-20 Sep 2013
  2. 2. The “Publishing Bottleneck (in Biodiversity)”? What is that?
  3. 3. Massive sampling/data gathering
  4. 4. „Dark species‟ increase dramatically! Rod Page, iPhylo blogspot, 12 April 2011
  5. 5. The paper/PDF impediment
  6. 6. … the burden or OCR, double-keying and markup of paper/PDF literature
  7. 7. The “impact factor” pressure
  8. 8. The “peer review” pressure
  9. 9. Low uptake of open data publishing/sharing
  10. 10. Source: Wikipedia
  11. 11. Primary data
  12. 12. A solution?
  13. 13. Primary data Publishing and sharing of primary data RE-USE of CONTENT
  14. 14. Launch date http://biodiversitydatajournal.com
  15. 15. Novel concepts Authoring, reviewing and publishing in one place, for the first time! Detailed upfront markup! “Small” datasets imported in and downloadable from text Large datasets published as data papers Text stored and treated as data Community peer-reviewed and community owned interoperable data Narrative (text) and data integrated publishing
  16. 16. How we do that? COMMUNITY PEER-REVIEW (PENSOFT JOURNAL SYSTEM 2.0) COLLABORATIVE ARTICLE AUTHORING (PENSOFT WRITING TOOL) MANUSCRIPT PUBLISHED XML TEXT + DATA Authors, Reviewers, Editors, Mentors, Copyeditors Automated submission Revisions online ARTICLES Occurr- ence data Taxon namesTaxon treatments Plazi Wiki COL Biblio- graphies
  17. 17. Novel work flows Authoring Peer-review and editorial manager Publishing and dissemination
  18. 18. Article templates
  19. 19. Classifications
  20. 20. Inivte a co-author
  21. 21. External links
  22. 22. Import tabular data
  23. 23. Template
  24. 24. Data converted into text
  25. 25. Compose plates
  26. 26. Pick up a reference
  27. 27. Cite a reference
  28. 28. Novel work flows Authoring Peer-review and editorial manager Publishing and dissemination
  29. 29. Penso Wri ng Tool (PWT) Collabora ve online wri ng Authors Penso Journal System (PJS) Editor Public Community Closed Review requests Peer-review op ons All reviews assembled into a single online version Review Review Review Nominated reviewers Public reviewers Panel reviewers Editorial decision & feedback Online edi ng Author’s revised manuscript Publica on & dissemina onOnline edi ng Community and public peer-review
  30. 30. Now imagine…
  31. 31. Consolidated Review Version
  32. 32. Novel work flow Authoring Peer-review and editorial manager Publishing and dissemination
  33. 33. Article metadata
  34. 34. Download data
  35. 35. Map distributions
  36. 36. Taxon names and their usages
  37. 37. Taxon profile
  38. 38. Taxon profile
  39. 39. Tables and Figures
  40. 40. Tables and Figures
  41. 41. Tables and Figures
  42. 42. References
  43. 43. No author guidelines! The tool will guide you!
  44. 44. Authors do not need to markup or hyperlink anything! PWT does this for you!
  45. 45. Embedded copyeditor?
  46. 46. Layout stage skipped!
  47. 47. LOW COST!
  48. 48. Why a new journal? BDJ is not just a new journal Neither it is a conventional data journal! A pilot work flow and infrastructure to mobilize, review, publish, store, disseminate, make interoperable, collate and re-use data through the act of scholarly publishing!
  49. 49. Imagine how data (if published in this way) can be re- used… … across different domains….
  50. 50. XML on GitHub
  51. 51. I Open Access! PLAZI Implementation in other domains welcome! penev@pensoft.net
  52. 52. Drawings: slavenapeneva.com

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