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Cv

  1. 1. Pau Marc Mu˜noz Torres Contact Information C/Sant Bernat 14 +34-669-80-51-19 08228 Les Fonts, Terrassa paumarc@gmail.com Barcelona Research Interests Bioinformatics, web and software development, Genetics, Proteomics, Big data, Data analysis, Computing Leanguages Catalan Spanish English Croatian Programming lenguages Perl mysql Postgesql Python R XHTML / CSS C++ Education Autonomus univeristy of Barcelona, Cerdanyola del Valles, Barcelona, Spain Ph.D., Bioinformatics, 2005-2014 • Thesis Topic: Bioinformatic study of antigenic presentation in MHC class II • Advisors: Xavier Daura Ribera, Ph.D and Juan A Cedano, Ph.D • Summa Cum Laude M.S., Structure and function of proteins, April, 2005 • Topic: Estudio bioinformatico de HLA classe II • Advisor: Xavier Daura Ribera, Ph.D Universitat Pompeu Fabra, Barcelona, Spain M.S., Bioinformatics, July 2007 • Summa Cum Laude Universitat de Barcelona, Barcelona, Spain B.Sc., Biology Setember 2002 1 of 4
  2. 2. Courses • Phylogeny and Genealogy of DNA: Reconstruction and Applications. July 2007 Centre especial de recerca en traxonomia, filogenia i ecologia moleculars (certfem), University of Barcelona, Barcelona, Spain • EUCOMM bioinformatics training course February 2007 Wellcome Trust Sanger Institute, Hinxton, Cambrige, UK • Introduction to Research for Essay Writing (coursera) 2016 Full Course, No Certificate University of California, Irvine Research Experience Postdoctoral Researcher 2014-present Laboratory for advanced genomics Division of Molecular Medicine Rudjer Bosckovic Institute, Zagreb (Croatia) Supervisor: Vugrek, O. Ph.D Project: Innomol (funded by the european programm FP7) Research Assistent 2010-2014 From Genome to Antigen: a Multidisciplinary Approach towards the Development of an Effective Vaccine Against Burkholderia pseudomallei, the Etiological Agent of Mieloidosis (GtA) Funding: Fondazione Cariplo (IT) Partners: Universit degli Studi di Milano (IT), Consiglio Nazionale delle Ricerche (IT), University of Exeter (UK), Fondazione Centro San Raffaele del Monte Tabor (IT), Universitat Autnoma de Barcelona (ES) Coordinator: Martino Bolognesi Phd Student 2005-2013 Computacional Biology laboratory Institut de Biomedicina i Biotecnologia Supervisors: Xavier Daura Rivera, Ph.D. and Juan A Ph.D Internal Student 2010-2012 Project associate student, Developmental neurobiology and neuronal regeneration laboratory, Scientific Park of Barcelona. University of Barcelona. Supervisor: Eduardo Soriano Garc´ıa PhD. On August 2004, I relinquished the research fellowship due to problems I had developing my research properly. Internal Student 2002 Loss of heterozygosity of DPC4 tumor suppressor gene in human sporadic colon cancer Student exchange Division of molecular medicine Rudjer Boskovic institute, Zagreb (Croatia). Supervisor: Mirko Hadizija PhD. 2 of 4
  3. 3. Refereed Journal Publications 1. Codina-Busqueta, E.; Scholz, E.; Mu˜noz-Torres, P. M.; Roura-Mir, C.; Costa, M.; Xufr, C.; Planas, R.; Vives-Pi, M.; Jaraquemada, D. and Mart, M. TCR bias of in vivo expanded T cells in pancreatic islets and spleen at the onset in human type 1 diabetes. J Immunol, Laboratory of Cellular Immunology, 2011, 186, 3787-3797 2. Muix, L.; Gay, M.; Mu˜noz-Torres, P. M.; Guitart, C.; Cedano, J.; Abian, J.; Alvarez, I. and Jaraquemada, D. The peptide-binding motif of HLA-DR8 shares important structural features with other type 1 diabetes-associated alleles. Genes Immun, 2011, 12, 504-512 3. Pau Marc Mu˜noz-Torres; Filip Roki´c; Robert Beluˇzi´c; Ivana Grbea; Oliver Vugrek msBiodat Analysis Tool, Big data analysis for high-throughput experiments BioData Mining 2016, 9, 1-7. Submitted Journal Publications 1. Ivana Grbea; Alon Kalo; Robert Beluˇzi´c; Lucija Kovaˇcevi´c; Adriana Lepur; Hodaya Hochberg; Itamar Kanter; Vesna Simunovi; Pau Marc Mu˜noz Torres; Yaron Shaw- tal; oliver vugrek Intracellular dynamics of S-adenosylhomocysteine hydrolase (AHCY) - new insights on the molecular basis of AHCY deficiency Papers in Preparation 1. Pau M. Mu˜noz-Torres, Juan A Cedano, Laia Muix Dolores Jaraquemada, Xavier Daura MHC2db: a non-assisted suit to discover HLA Class II motifs and predict epitopes 2. Pau M. Mu˜noz-Torres, Juan A Cedano, Xavier Daura Super Vector Machine Based on amino acid Distances for prediction of MHCII peptide binding 3. Pau M. Mu˜noz-Torres, Robert Beluˇzi´c, and Oliver vugrek CroGen, a Croatian Genome Repository for Next-Generation Sequence (NGS) data of the Croatian population. Oral Communication 1. Biocomputational Study of MHC II binding motives Pau M. Mu˜noz- Torres, Juan A. Cedano, Laia Muix, Dolores Jaraquemada, Xavier Daura. HIBIT, Istambul (Turkey) 2008 Posters 1. Epigenomics of S-adenosylhomocysteine deficiency. 2016 Belui, R., Grbea, I., Kovaevi, L., Torres, P. M. M., and Vugrek, O. Game of Epigenomics. Dubrovnik (Croatia). 2. msBiodata Analysis Tool, a web tool to extract relevant information from proteomics experiments 2015 Pau M. Mu˜noz-Torres, Robert Beluic, Ivana Grbea, Oliver Vugrek. The 29th Annual Symposium of the Protein Society. Barcelona (Spain) 3. IRBIT, a Inositol 1, 4, 5-trisphosphate receptor (IP3R) binding protein specifically binds to and inactivates S-adenosyl-L-homocysteine hydrolase. 2014 Grbesa, I., L. Kovacevic, R. Beluzic, A. Lepur, J. Knezevic, J. Trmcic Cvitas, P. M. Torres, and O. Vugrek. In FEBS JOURNAL, vol. 281, pp. 577-577. 111 RIVER ST, HOBOKEN 07030- 5774, NJ USA: WILEY-BLACKWELL, 2014. 3 of 4
  4. 4. 4. A comparative-genomics algorithm to identify antigenic variability in the core proteome of Burkholderia pseudomallei 2012 Daniel Yero,Oscar Conchillo, Pau M. Mu˜noz, Isidre Gibert and Xavier Daura. European Meliodosis Network congress, Amsterdam (Netherlands) 5. Biocomputational Study of MHC II binding motives 2008 Pau M. Mu˜noz-Torres, Juan A. Cedano, Laia Muix, Dolores Jaraquemada, Xavier Daura. HIBIT, Istambul (Turkey). 6. Biocomputational Study of MHC II binding motives 2008 Pau M. Mu˜noz-Torres, Juan A. Cedano, Laia Muix, Dolores Jaraquemada, Xavier Daura. Jornadas de Bioinformatica, Valncia (Spain). 7. Biocomputational Study of MHC II binding motives 2008 Pau M. Mu˜noz-Torres, Juan A. Cedano, Laia Muix, Dolores Jaraquemada, Xavier Daura. V Jornadas de Bioinformatica, Zaragoza (Spain). Grants • Grant of collaboration UB-PCB 2002-2004 Developmental Neurobiology and Regeneration Laboratory • Grant of collaboration UAB-IBB 2004-2005 laboratory of computational biology proteomics • Beca BSCH-UAB de Formacio de Personal Investigador de la UAB 2005-2012 • Technical support for research UAB-IBB 2012 laboratory of computational biology proteomics UAB Awards • Grant from ”Societat Econ`omica Barcelonesa d’Amics del Pais” January 2005 I received a grant for my trajectory as student with disability and the work in the study done on Reelin structure • Prize Isabel Trabal. November 2014 This prize was given for my trajectory as a scientific with disability and the job done during my Phd. The jury decided to gave me the price due to both my professional and personal values. Caixa d’Enginyers. Other information of interest • Considered as high-level athlete by the Consejo Superior de Deportes of spain at the BOE of May 2nd, 1996 for participating at Paralimpic Games of Barcelona 1992 (2 medals) and Atlanta 1996. 4 of 4

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