Forums: Slide 6 of 21
there are no stupid questions
Forums: Slide 7 of 21
common questions #1 - “doing things with FASTA ﬁles”
How To Transform An Interleaved Fasta File To A Sequential Fasta File
Change Fasta Id’S
Extracting Sequence From A 3Gb Fasta File
Fasta sequence of nucleotide sequences
How To Save A Mirbase Search Result Into A Fasta File
Searching Fasta File For Specific Ids
Problem With Fasta Parser
Parsing Fasta Headers Using Perl Language
Remove Motif Sequence From The Fasta File Of Sequences
Mean Length Of Fasta Sequences
Forums: Slide 8 of 21
common questions #2 - “match/compare/intersect”
How to compare 2 VCF files
Compare Two Fasta Files By Headers
Comparing The Numbers Present In Two Files And Get The Matched
Intersect Bam Files
Plink: Quick Way To Combine Two Datasets Using Only Common Markers
Intersect Bam Files
intersecting bed and vcf files
Tool for finding unique sets of proteins
Fast search for many patterns
Filter A Tsv File Content Based On Content From Other Tsv Files?
Forums: Slide 9 of 21
common questions #3 - “is my result signiﬁcant?”
Detecting Different Amino Acid Composition Between Two Bacterial Genomes?
Is It Important That A Significant Snp Should Be In Ld With It Nearby Snps?
Are P-Values Obtained From Two Separate Analyses On The Same Population
Select significant terms under a parent GO term
Significance of overlap between multiple lists
Minimum Or Optimal Rpkm Value To Find If A Transcript Is Significant
Significant Biology analysis using differentially expressed genes
How Many Samples At Least Are Needed To Discover New Snps For Statistical
Any Tools To Identify Significantly Altered Pathways?
How To Get Significant Genes From Microarray Experiments Data In Geo
Forums: Slide 10 of 21
example questions #4 - “convert ID X to ID Y”
this is the one that comes up over and over and over...
Convert Uniprot Id To Pdb Id
How To Convert Ccds Ids To Swiss Prot Ids
How To Convert Arabidopsis Gene Id To Ncbi Geneid, Ncbi-Gi Or Uniprot?
How To Convert Refseq Id To Gene Symbol As Pitx1
Converting Protein Names To Gene Ids
How To Convert Affymetrix Ids To Genbank Ids
How to get list of GeneIDs using SNP ID list?
How To Convert Uniprot Ids To Ensemble Gene/Transcript Ids
Info Needed Regarding Gene Id Conversion From Agilent To Others
Convert kegg ids to uniprot ids
Forums: Slide 11 of 21
Why do the same questions keep coming up?
Forums: Slide 12 of 21
can site design help? - cf. stackoverﬂow
live search, similar posts, autosuggest
Forums: Slide 13 of 21
SEO / Google issues? - apparently not
Forums: Slide 14 of 21
cultural issues: lack of community awareness ?
for me, for free, right now
Forums: Slide 15 of 21
cultural issues: “quick ﬁxes over principles” ?
Forums: Slide 16 of 21
better question #1
How To Extract Multiple Fasta Sequences From A File With Perl?
How to parse Fasta (and other formats), then perform operations
on the parsed elements?
Forums: Slide 17 of 21
better question #2
Matching Ensemble Ids In Input And Library File Using R
What are some useful utilities for processing plain-text ﬁles?
Forums: Slide 18 of 21
better question #3
Signiﬁcant Biology analysis using differentially expressed genes
What statistical methods are appropriate for the data that I have?
Forums: Slide 19 of 21
better question #4
Convert Ofﬁcial Gene Symbols To Uniprot Ids In Python ?
What resources are there to convert between various identiﬁers?
Forums: Slide 20 of 21
are Q & A sites effective resources ?
are we helping (can we help?) people ask “better questions” ?
are we doing enough to develop “principles of bioinformatic analysis” ?