1. A good
looking
pipeline
nacho caballero
slide
makeover 3

2. BEfore

4. after

10. Read the
accompanying
explanation

11. BEfore

12. P. acnes S. epidermidis
Core 88% 80%
Avg Size 2.5Mb 2.5Mb
GC 60% 32%
Average ORFs 2,626 2,436
# Sequenced Genomes 78 61
Comparative genome analyses
Conlan&et&al.,&Genome&Biology&2012,&Tomida&et&al.,&mBio&2013&

13. after 1

14. Conlan et al., Genome Biology 2012, Tomida et al., mBio 2013
Genomes highly conserved within a species

15. after 2

16. Conlan et al., Genome Biology 2012, Tomida et al., mBio 2013
Genomes highly conserved within a species

17. BEfore

19. after 1

23. after 2

25. Align reads !
to strain
sequences

27. Reassign !
ambiguous reads !
with Pathoscope

28. Reassign !
ambiguous reads !
with Pathoscope

29. sign up
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