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A good
looking
pipeline
nacho caballero
slide
makeover 3
BEfore
after
Read the
accompanying
explanation
BEfore
P. acnes S. epidermidis
Core 88% 80%
Avg Size 2.5Mb 2.5Mb
GC 60% 32%
Average ORFs 2,626 2,436
# Sequenced Genomes 78 61
Co...
after 1
Conlan et al., Genome Biology 2012, Tomida et al., mBio 2013
Genomes highly conserved within a species
after 2
Conlan et al., Genome Biology 2012, Tomida et al., mBio 2013
Genomes highly conserved within a species
BEfore
after 1
after 2
Align reads !
to strain
sequences
Reassign !
ambiguous reads !
with Pathoscope
Reassign !
ambiguous reads !
with Pathoscope
sign up
to get an email with
the next slide makeover
click
A good looking pipeline
A good looking pipeline
A good looking pipeline
A good looking pipeline
A good looking pipeline
A good looking pipeline
A good looking pipeline
A good looking pipeline
A good looking pipeline
A good looking pipeline
A good looking pipeline
A good looking pipeline
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A good looking pipeline

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A good looking pipeline

  1. 1. A good looking pipeline nacho caballero slide makeover 3
  2. 2. BEfore
  3. 3. after
  4. 4. Read the accompanying explanation
  5. 5. BEfore
  6. 6. P. acnes S. epidermidis Core 88% 80% Avg Size 2.5Mb 2.5Mb GC 60% 32% Average ORFs 2,626 2,436 # Sequenced Genomes 78 61 Comparative genome analyses Conlan&et&al.,&Genome&Biology&2012,&Tomida&et&al.,&mBio&2013&
  7. 7. after 1
  8. 8. Conlan et al., Genome Biology 2012, Tomida et al., mBio 2013 Genomes highly conserved within a species
  9. 9. after 2
  10. 10. Conlan et al., Genome Biology 2012, Tomida et al., mBio 2013 Genomes highly conserved within a species
  11. 11. BEfore
  12. 12. after 1
  13. 13. after 2
  14. 14. Align reads ! to strain sequences
  15. 15. Reassign ! ambiguous reads ! with Pathoscope
  16. 16. Reassign ! ambiguous reads ! with Pathoscope
  17. 17. sign up to get an email with the next slide makeover click

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