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Phylotastic TNRS, January 28, 2013

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Phylotastic TNRS, January 28, 2013

  1. 1. Taxonomic Name Resolution Service http://evoio.org/wiki/Phylotastic/TNRS by Gaurav Vaidya (http://ggvaidya.com/)Monday, 28 January, 13
  2. 2. Panthera tigrisMonday, 28 January, 13
  3. 3. http://en.wikipedia.org/wiki/Panthera_tigris Panthera tigrisMonday, 28 January, 13
  4. 4. http://eol.org/pages/328674/overview Panthera tigrisMonday, 28 January, 13
  5. 5. http://www.ncbi.nlm.nih.gov/nuccore?term=Panthera%20tigris Panthera tigrisMonday, 28 January, 13
  6. 6. http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9694&lvl=3&lin=f&keep=1&srchmode=1&unlock Panthera tigrisMonday, 28 January, 13
  7. 7. http://data.gbif.org/occurrences/searchWithMap.htm?c[0].s=20&c[0].p=0&c[0].o=5219416 Panthera tigrisMonday, 28 January, 13
  8. 8. http://www.mappinglife.org/Panthera_tigris Panthera tigrisMonday, 28 January, 13
  9. 9. ProblemsMonday, 28 January, 13
  10. 10. http://species.wikimedia.org/wiki/Panthera_tigris SynonymyMonday, 28 January, 13
  11. 11. http://data.gbif.org/occurrences/searchWithMap.htm?c[0].s=20&c[0].p=0&c[0].o=4969819 SynonymyMonday, 28 January, 13
  12. 12. Formatting Panthera tigris P. tigris Panthera tigris (Linnaeus, 1758) Panthera tigris Linnaeus, 1758 Panthera tigris L. Panthera tigris Linn. Panthera_tigris Ptigris_gi_440919618 felidae/panthera/panthera_tigrisMonday, 28 January, 13
  13. 13. Misspellings Pantera tigris P. tigrs Panthera tigris (Linneaus, 1758) Panthera tigris Linnaeus, 1858 Panthera tigris l. Panthera tigris linn. Panthera_tigriscoi Pt_gi_440919618 felidae/panthera/panthera_tigrisMonday, 28 January, 13
  14. 14. http://en.wikipedia.org/wiki/Crucibulum HomonymsMonday, 28 January, 13
  15. 15. http://en.wikipedia.org/wiki/Crucibulum_(gastropod) HomonymsMonday, 28 January, 13
  16. 16. http://www.inaturalist.org/taxon_changes/31 Changes in circumscriptionMonday, 28 January, 13
  17. 17. http://www.inaturalist.org/taxon_changes/31 Changes in circumscriptionMonday, 28 January, 13
  18. 18. http://www.inaturalist.org/taxon_changes/31 Changes in circumscriptionMonday, 28 January, 13
  19. 19. http://www.inaturalist.org/taxon_changes/31 Changes in circumscriptionMonday, 28 January, 13
  20. 20. http://www.inaturalist.org/taxon_changes/31 Differences in opinionMonday, 28 January, 13
  21. 21. http://tnrs.iplantcollaborative.org/TNRSapp.html iPlant TNRS For more information: http://www.biomedcentral.com/1471-2105/14/16Monday, 28 January, 13
  22. 22. TaxosaurusMonday, 28 January, 13
  23. 23. http://api.phylotastic.org/tnrs TaxosaurusMonday, 28 January, 13
  24. 24. What works? An API for matching names. Names => URLs Software which matches names against: Mammal Species of the World, 3rd ed NCBI Taxonomy iPlant TNRSMonday, 28 January, 13
  25. 25. What’s next? More databases: ITIS (all life) IRMNG (all life) WoRMS (marine species) More features: Fuzzy matching. Provenance. More reliable.Monday, 28 January, 13
  26. 26. But ...Monday, 28 January, 13
  27. 27. Bininda-Emonds et al (2007)Nature 446: 507-512 http://dx.doi.org/10.1038/nature05634 Matching names against namesMonday, 28 January, 13
  28. 28. Bininda-Emonds et al (2007)Nature 446: 507-512 http://dx.doi.org/10.1038/nature05634 Matching names against names Logo from http://www.bucknell.edu/msw3/Monday, 28 January, 13
  29. 29. Matching names against namesMonday, 28 January, 13

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