National Center for  Biomedical Ontology Trish Whetzel  Outreach Coordinator
NCBO <ul><li>One of eight National Centers for Biomedical Computing under the NIH Roadmap </li></ul><ul><li>Mission is to ...
BioPortal <ul><li>BioPortal  </li></ul><ul><ul><li>Repository of ontologies </li></ul></ul>http://bioportal.bioontology.org/
BioPortal Features – Just a few… <ul><ul><ul><li>Web service access to ontology content </li></ul></ul></ul><ul><ul><ul><u...
NCBO Interest in MIBBI <ul><li>Plan to develop a data format repository </li></ul><ul><ul><li>MI Checklists are a natural ...
BioPortal Notes
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Whetzel ncbo mibbi-2010

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Whetzel ncbo mibbi-2010

  1. 1. National Center for Biomedical Ontology Trish Whetzel Outreach Coordinator
  2. 2. NCBO <ul><li>One of eight National Centers for Biomedical Computing under the NIH Roadmap </li></ul><ul><li>Mission is to develop software infrastructure to develop and use ontologies </li></ul>
  3. 3. BioPortal <ul><li>BioPortal </li></ul><ul><ul><li>Repository of ontologies </li></ul></ul>http://bioportal.bioontology.org/
  4. 4. BioPortal Features – Just a few… <ul><ul><ul><li>Web service access to ontology content </li></ul></ul></ul><ul><ul><ul><ul><li>Provides standardized access regardless of ontology format </li></ul></ul></ul></ul><ul><ul><ul><li>Notes </li></ul></ul></ul><ul><ul><ul><ul><li>Mechanism to Comment on terms and Propose new terms </li></ul></ul></ul></ul><ul><ul><ul><li>Ontology Views </li></ul></ul></ul><ul><ul><ul><ul><li>Subsets of ontologies </li></ul></ul></ul></ul><ul><ul><ul><li>Mappings </li></ul></ul></ul><ul><ul><ul><ul><li>Indicates level of similarity between terms </li></ul></ul></ul></ul>
  5. 5. NCBO Interest in MIBBI <ul><li>Plan to develop a data format repository </li></ul><ul><ul><li>MI Checklists are a natural fit </li></ul></ul><ul><ul><li>Analogous information in the medical domain are Case Report Forms </li></ul></ul><ul><li>Utilize Existing NCBO Software </li></ul><ul><ul><li>Mappings to link data elements across MI Checklists </li></ul></ul><ul><ul><li>Views to for re-use of value sets </li></ul></ul>
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  7. 7. BioPortal Notes

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