AgriSchemas Progress Report
Report
Rothamsted Research, UKFollow
Nov. 12, 2019•0 likes•235 views
0 likes
Be the first to like this
Show More
views
Total views
0
On Slideshare
0
From embeds
0
Number of embeds
0
Check these out next
![[Databeers] 06/05/2014 - Boris Villazon: “Data Integration - A Linked Data ap...](https://cdn.slidesharecdn.com/ss_thumbnails/ld-databeers-140508020333-phpapp02-thumbnail.jpg?width=600&height=600&fit=bounds)
AgriSchemas Progress Report
Nov. 12, 2019•0 likes•235 views
0 likes
Be the first to like this
Show More
views
Total views
0
On Slideshare
0
From embeds
0
Number of embeds
0
Download to read offline
Report
Science
Presented at the Nov 2019 DFW hackathon
Rothamsted Research, UKFollow
Recommended
2019 Inspire Challenge Q&A Webinarcgiarbigdata
Government data catalogues interoperabilityFadi Maali
Data management using GeoNetwork at NCI - Jingbo Wang, Kesley Druken (NCI)ARDC
Ag Data Commons: Adding Value to open agricultural research dataCyndy Parr
Notes about SWAT4LS 2018Rothamsted Research, UK
Datasets, Services & Tools - Pangiota Koltsida & Dimitris Gavrilis Blue BRIDGE
AgriSchemas Progress Report
- AgriSchemas and FAIR-ification of DFW Data Rothamsted Research, 11/11/2019 Marco Brandizi <marco.brandizi@rothamsted.ac.uk> Find these slides on SlideShare
- Linked Data APIs APIs + standards Guidelines Tabular formats Vocabularies ’n onto services Specific formats What do we have in Agrifood?
- The DFW Needs
- The Knetminer Needs • Green: Ondex plug-ins • rdf2neo is a generic, non Ondex-specific rdf->Neo4j conversion tool • Brandizi et al, IB-2018 (https://dx.doi.org/10.1515%2Fjib-2018-0023) • Brandizi et al, SWAT4LS-2018 (https://doi.org/10.6084/m9.figshare.7314323.v1)
- Towards interoperability: AgriSchemas
- Towards interoperability: AgriSchemas
- Towards interoperability: AgriSchemas Experimental data (EBI GXA) Molecular biology (Knetminer) Host-pathogen interaction (PHI- Base)
- Towards interoperability: AgriSchemas Molecular biology (Knetminer)
- Towards interoperability: AgriSchemas Experimental data (EBI GXA)
- Towards interoperability: AgriSchemas Host-pathogen interaction (PHI- Base)
- The Knetminer SPARQL endpoint A first prototype of Knetminer data + EBI’s GXA data, modelled after AgriSchemas Try it live: http://knetminer-data.cyverseuk.org/lodestar/sparql More examples: https://bit.ly/2X34rgF
- Integration and Interoperability Knetminer Info GXA Info
- What’s next? • This hackathon: • Review what’s done so fare with AgriSchemas • Possibly think of new use cases • eg, CerealsDB, AHDB, T3, GG3, DFW vocabularies, DFW datasets being published • eg, weather data (in particular, those linked to trials via MIAPPE) • Start defining the AgriSchemas schema/ontology • Possibly now or surely later: • Convert real data sets • Finalise the endpoint and convert to Neo4j • Develop sample applications (eg, Python analyses, Jupyter analyses) • Submit to some journal…
Editor's Notes
- Details for the downloader, or the second part
- Details for the downloader, or the second part
- Details for the downloader, or the second part
- Details for the downloader, or the second part
- Data from different sources are merged together in the RDF coming from URI resolution The LODEStar browser can show that, but also resolve the URI (via content negotiation)