Neuronvisio Intro

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Neuronvisio Intro http://mattions.github.com/neuronvisio/

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Neuronvisio Intro

  1. 1. Introduction Software Neuronvisio Tutorial Michele Mattioni mattioni@ebi.ac.uk EMBL-EBI and University of Cambridge 06 March 2010 Michele Mattioni Neuronvisio Tutorial
  2. 2. Introduction Software Outline 1 Introduction Background 2 Software How to use it Where to get it Michele Mattioni Neuronvisio Tutorial
  3. 3. Introduction Background Software Outline 1 Introduction Background 2 Software How to use it Where to get it Michele Mattioni Neuronvisio Tutorial
  4. 4. Introduction Background Software Why I built it Eric S. Raymond - The Cathedral and the Bazaar Every good work of software starts by scratching a developer’s personal itch. Michele Mattioni Neuronvisio Tutorial
  5. 5. Introduction How to use it Software Where to get it Outline 1 Introduction Background 2 Software How to use it Where to get it Michele Mattioni Neuronvisio Tutorial
  6. 6. Introduction How to use it Software Where to get it At glance Michele Mattioni Neuronvisio Tutorial
  7. 7. Introduction How to use it Software Where to get it Visualize a model It is possible to zoom, rotate and move the model. Michele Mattioni Neuronvisio Tutorial
  8. 8. Introduction How to use it Software Where to get it Plot the results Michele Mattioni Neuronvisio Tutorial
  9. 9. Introduction How to use it Software Where to get it Explore the timecourse of a variable Michele Mattioni Neuronvisio Tutorial
  10. 10. Introduction How to use it Software Where to get it How to integrate in your code Figure: Python Model integration Figure: Hoc Model integration Michele Mattioni Neuronvisio Tutorial
  11. 11. Introduction How to use it Software Where to get it Controls window Michele Mattioni Neuronvisio Tutorial
  12. 12. Introduction How to use it Software Where to get it Saving simulations results Complex simulations can take ages Store the results to analyze them later on Manager class to create the data structure and to remap it to neuronvisio. Michele Mattioni Neuronvisio Tutorial
  13. 13. Introduction How to use it Software Where to get it Saving a simulation from the GUI Michele Mattioni Neuronvisio Tutorial
  14. 14. Introduction How to use it Software Where to get it Integrating that with you cluster’ simulations Michele Mattioni Neuronvisio Tutorial
  15. 15. Introduction How to use it Software Where to get it Website and Docs http://mattions.github.com/neuronvisio/ Michele Mattioni Neuronvisio Tutorial
  16. 16. Introduction How to use it Software Where to get it Source code Latest available Version 0.4.3 Download http://pypi.python.org/pypi/neuronvisio/ Website http://mattions.github.com/neuronvisio/ The code is under GPL3. On the website there are the instruction to install the dependencies Michele Mattioni Neuronvisio Tutorial
  17. 17. Introduction How to use it Software Where to get it Source code Latest available Version 0.4.3 Download http://pypi.python.org/pypi/neuronvisio/ Website http://mattions.github.com/neuronvisio/ The code is under GPL3. On the website there are the instruction to install the dependencies Hacking The current code in development is available from github git clone git://github.com/mattions/neuronvisio.git Michele Mattioni Neuronvisio Tutorial
  18. 18. Introduction How to use it Software Where to get it That’s all folks The indecent proposal... Do you want to see a live demo? :) Michele Mattioni Neuronvisio Tutorial

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