Era7 Bacterial Genome Annotation

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Era7 Bacterial Genome Annotation

  1. 1. BACTERIAL GENOME ANNOTATION SERVICE
  2. 2. www.era7bioinformatics.com
  3. 3. Our service highlights Specifically designed for data Based on So it’s and It’s according to our customer needswww.era7bioinformatics.com
  4. 4. specifically designed for datawww.era7bioinformatics.com
  5. 5. specifically designed for datawww.era7bioinformatics.com
  6. 6. specifically designed for datawww.era7bioinformatics.com
  7. 7. specifically designed for datawww.era7bioinformatics.com
  8. 8. specifically designed for data Error-tolerant system It can handle sequencing errors that may cause: Indels, Frameshifts, Base substitutionwww.era7bioinformatics.com
  9. 9. specifically designed for data Error-tolerant system It can handle sequencing errors that may cause: Indels, Frameshifts, Base substitutionWorks withLarge number of contigs: There’s no need to have the genome closedLarge Bacterial Genomes: Up to 7Mb genomes annotated successfullywww.era7bioinformatics.com
  10. 10. We useSo our service isIn 24 hours you can have your bacterial genome analyzedwww.era7bioinformatics.com
  11. 11. We useSo our service isIn 24 hours you can have your bacterial genome analyzed and whether you need to annotate 1 genome or 100 we can handle itwww.era7bioinformatics.com
  12. 12. It’sThe annotation can be focused on particular aspects you may be interested in: The presence of a particular enzime activity Resistance to antibiotics Mobile elements…www.era7bioinformatics.com
  13. 13. annotationThe annotation system is based on the latest releases of Uniprot and GenBank databases So you’ll get an up to date annotationwww.era7bioinformatics.com
  14. 14. www.era7bioinformatics.com
  15. 15. Sequencing datawww.era7bioinformatics.com
  16. 16. Sequencing data Info about yourproject, your needswww.era7bioinformatics.com
  17. 17. Sequencing data Info about your Reference Proteinsproject, your needs and RNAswww.era7bioinformatics.com
  18. 18. Manual selection by an expert in bacterial genomics Sequencing data Info about your Reference Proteinsproject, your needs and RNAswww.era7bioinformatics.com
  19. 19. Manual selection by an expert in bacterial genomics Sequencing data BG7 Info about your Reference Proteinsproject, your needs and RNAswww.era7bioinformatics.com
  20. 20. Preliminary results Manual selection by an expert in bacterial genomics Sequencing data BG7 Info about your Reference Proteinsproject, your needs and RNAswww.era7bioinformatics.com
  21. 21. Preliminary results Automated QC Tests Manual selection by an expert in bacterial genomics Sequencing data Results BG7 Passing QC tests Info about your Reference Proteinsproject, your needs and RNAswww.era7bioinformatics.com
  22. 22. Preliminary results Automated QC Tests Manual selection by an expert in bacterial genomics Sequencing data Results BG7 Passing QC tests Definitive results Info about your Reference Proteinsproject, your needs and RNAswww.era7bioinformatics.com
  23. 23. Preliminary results Automated QC Tests Manual selection by an expert in bacterial genomics Sequencing data An expert in Results Bacterial BG7 Passing QC genomics tests checks that everything is OK Definitive results Info about your Reference Proteinsproject, your needs and RNAswww.era7bioinformatics.com
  24. 24. Preliminary results Automated QC Tests Manual selection by an expert in bacterial genomics Sequencing data An expert in Results Bacterial BG7 Passing QC genomics tests checks that everything is OK Definitive results Info about yourproject, your needs Reference Proteins and RNAs 24 hrwww.era7bioinformatics.com
  25. 25. Preliminary results Automated QC Tests Manual selection by an expert in bacterial genomics Sequencing data An expert in Results Bacterial BG7 Passing QC genomics tests checks that everything is OK Definitive results Info about yourproject, your needs Reference Proteins and RNAs 24 hrwww.era7bioinformatics.com
  26. 26. A Input contigs (nt) B C BG7 Systemwww.era7bioinformatics.com
  27. 27. A Input contigs (nt) B C BG7 System A B C Input contigs translated into the 6 reading frames (aa)www.era7bioinformatics.com
  28. 28. A Input contigs (nt) B C BG7 System A B C Reference Proteins (aa) Input contigs translated into the 6 reading frames (aa)www.era7bioinformatics.com
  29. 29. A Input contigs (nt) B C BG7 System A B C Reference Proteins (aa) are searched in the translated contigs Input contigs translated into the 6 reading frames (aa)www.era7bioinformatics.com
  30. 30. Genes are defined based on sequence similarity to proteins BG7 System A B Cwww.era7bioinformatics.com
  31. 31. Genes are defined based on sequence similarity to proteins BG7 System A B Cwww.era7bioinformatics.com
  32. 32. Genes are defined based on sequence similarity to proteins BG7 System RNAs and then searched for in the contigs and annotated A B Cwww.era7bioinformatics.com
  33. 33. Genes are defined based on sequence similarity to proteins BG7 System RNAs and then searched for in the contigs and annotated A B Cwww.era7bioinformatics.com
  34. 34. What would you get at the end? A Fast and Accurate genome annotation rich in functional data: GO, Interpro… Deliverables in several formats: XML, GenBank, GFF, Fasta, .xls (Excel), .doc (Word), .txt An user friendly annotation viewerwww.era7bioinformatics.com
  35. 35. And some important things to know: Working with us means No IP over the results, they’re all yours CDA Bill by project Of course, there are other ways… research collaborationwww.era7bioinformatics.com
  36. 36. Follow us on: eduardopareja marina_manrique rtobes Eduardo Pareja Marina Manrique Raquel Tobes Marina Manrique Raquel TobesJoin our NGS group at LinkedIn epareja@era7.com rtobes@era7.com mmanrique@era7.comwww.era7bioinformatics.com

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