Scientific Highlights: The Reflect and NetPhorest web resources

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Novo Nordisk Foundation Center for Protein Research Scientific Advisory Board Meeting, Hvidøre, Klampenborg, Denmark, May 15, 2009

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Scientific Highlights: The Reflect and NetPhorest web resources

  1. 1. Scientific Highlights The Reflect and NetPhorest web resources www.cpr.ku.dk Lars Juhl Jensen [email_address]
  2. 2. Reflect
  3. 3. real-time text mining
  4. 4. enhance text with data
  5. 6. augmented browsing
  6. 9. collaborate publishers
  7. 10. user editing
  8. 11. more dictionaries
  9. 12. taxonomy
  10. 13. diseases
  11. 14. mutations
  12. 15. protein modifications
  13. 16. NetPhorest
  14. 17. sequence motifs
  15. 19. automated pipeline
  16. 20. Miller, Jensen et al., Science Signaling , 2008
  17. 21. data organization
  18. 22. Miller, Jensen et al., Science Signaling , 2008
  19. 23. compilation of datasets
  20. 24. redundancy reduction
  21. 25. training and evaluation
  22. 26. classifier selection
  23. 27. motif collection
  24. 28. 179 kinases
  25. 29. 93 SH2 domains
  26. 30. 8 PTB domains
  27. 31. BRCT domains
  28. 32. WW domains
  29. 33. 14-3-3 proteins
  30. 34. 23 phosphatases
  31. 35. F-box proteins
  32. 36. other modifications
  33. 37. model organisms
  34. 38. S. cerevisiae
  35. 39. D. melanogaster
  36. 40. C. elegans
  37. 41. use cases
  38. 42. disease-related kinases
  39. 43. Miller, Jensen et al., Science Signaling , 2008
  40. 44. cell-cycle kinases
  41. 46. human variation
  42. 47. signaling networks
  43. 48. NetworKIN
  44. 49. Linding, Jensen, Ostheimer et al., Cell , 2007
  45. 50. experiment design
  46. 51. Fedorov et al., PNAS , 2007
  47. 52. Acknowledgments <ul><li>Reflect.ws </li></ul><ul><ul><li>Sean O’Donoghue </li></ul></ul><ul><ul><li>Evangelos Pafilis </li></ul></ul><ul><ul><li>Heiko Horn </li></ul></ul><ul><ul><li>Michael Kuhn </li></ul></ul><ul><ul><li>Nigel Brown </li></ul></ul><ul><ul><li>Reinhardt Schneider </li></ul></ul><ul><li>NetPhorest.info </li></ul><ul><ul><li>Rune Linding </li></ul></ul><ul><ul><li>Martin Lee Miller </li></ul></ul><ul><ul><li>Francesca Diella </li></ul></ul><ul><ul><li>Claus Jørgensen </li></ul></ul><ul><ul><li>Michele Tinti </li></ul></ul><ul><ul><li>Lei Li </li></ul></ul><ul><ul><li>Marilyn Hsiung </li></ul></ul><ul><ul><li>Sirlester A. Parker </li></ul></ul><ul><ul><li>Jennifer Bordeaux </li></ul></ul><ul><ul><li>Thomas Sicheritz-Pontén </li></ul></ul><ul><ul><li>Marina Olhovsky </li></ul></ul><ul><ul><li>Adrian Pasculescu </li></ul></ul><ul><ul><li>Jes Alexander </li></ul></ul><ul><ul><li>Stefan Knapp </li></ul></ul><ul><ul><li>Nikolaj Blom </li></ul></ul><ul><ul><li>Peer Bork </li></ul></ul><ul><ul><li>Shawn Li </li></ul></ul><ul><ul><li>Gianni Cesareni </li></ul></ul><ul><ul><li>Tony Pawson </li></ul></ul><ul><ul><li>Benjamin E. Turk </li></ul></ul><ul><ul><li>Michael B. Yaffe </li></ul></ul><ul><ul><li>Søren Brunak </li></ul></ul><ul><li>NetworKIN.info </li></ul><ul><ul><li>Rune Linding </li></ul></ul><ul><ul><li>Gerard Ostheimer </li></ul></ul><ul><ul><li>Francesca Diella </li></ul></ul><ul><ul><li>Karen Colwill </li></ul></ul><ul><ul><li>Jing Jin </li></ul></ul><ul><ul><li>Pavel Metalnikov </li></ul></ul><ul><ul><li>Vivian Nguyen </li></ul></ul><ul><ul><li>Adrian Pasculescu </li></ul></ul><ul><ul><li>Jin Gyoon Park </li></ul></ul><ul><ul><li>Leona D. Samson </li></ul></ul><ul><ul><li>Rob Russell </li></ul></ul><ul><ul><li>Peer Bork </li></ul></ul><ul><ul><li>Michael Yaffe </li></ul></ul><ul><ul><li>Tony Pawson </li></ul></ul>

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