Democratizing the genome

Melanie Swan
Melanie SwanTechnophysicist, Blockchain Theorist, Philosophy, Purdue University at Institute for Blockchain Studies
Democratizing the Genome Melanie Swan  Founder DIYgenomics +1-650-681-9482 @DIYgenomics   www.DIYgenomics.org   [email_address] June 12, 2010 H+ Summit, Harvard University Slides: http://slideshare.net/LaBlogga/slideshows
Summary ,[object Object],[object Object],[object Object],[object Object],June 12, 2010 DIYgenomics.org Image credit: http://www-nmr.cabm.rutgers.edu/photogallery/proteins/gif/dna.gif
We are standing in a new era June 12, 2010 DIYgenomics.org 1999-2009: cost of DNA sequencing decreased 14,000x. April 1, 2010.  Image credit: http://pubs.acs.org/cen/_img/87/i50/8750cover2_law.gif Dec. 14, 2009
A new construct of biocitizen identity  June 12, 2010 DIYgenomics.org Source: Extended from Swan, M. Emerging patient-driven health care models: an examination of health social networks, consumer personalized medicine and quantified self-tracking. Int. J. Environ. Res. Public Health  2009 , 2, 492-525, Figure 1.
Confluence of factors shaping DIYgenomics June 12, 2010 DIYgenomics.org 1. Rapid declines in the cost of DNA sequencing ,[object Object],[object Object],[object Object],[object Object],3. Web 2.0 and Social Networking 2. Big data era: 1 zettabyte
3 rd  and 4 th  generation sequencing arrives June 12, 2010 DIYgenomics.org 3 rd  Gen: Sequencing by Synthesis 2 nd  Gen: Parallelized sequencing 1 st  Gen: Sanger Sequencing 4 th  Gen: Electronic Synthesis Sources: http://www.genomicseducation.ca/files/images/information_articles/sequencing.gif, http://www.wellcome.ac.uk/News/2009/Features/WTX056032.htm, http://www.pacificbiosciences.com/video_lg.html,  http://www.nanoporetech.com/sequences
Unbounded opportunity: read  and write  DNA ,[object Object],[object Object],June 12, 2010 DIYgenomics.org Image credit: http://www.guardian.co.uk/science/2010/may/20/craig-venter-synthetic-life-form May 22, 2010  Source: Gibson DG et al. Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome. Science. 2010 May 20.
DIYgenomics citizen science study structure June 12, 2010 DIYgenomics.org ,[object Object],Genotype MTHFR SNPs: rs1801133 (A/G) rs1801131 (A/G) Phenotype Blood tests:  B-12 and Homocysteine Intervention ,[object Object],[object Object],[object Object],Findings Analyze, explore, implement, share, and publish
25+ DIYgenomics studies outlined ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],June 12, 2010 DIYgenomics.org Source: http://diygenomics.pbworks.com Image credit: http://www.tigerteamconsulting.com/TTC_Site/sectors_binf.jsp
Personal genome analysis tools June 12, 2010 DIYgenomics.org ,[object Object],Risk for top 20 Health Conditions Response to 250 Drugs  Sample data CC TT A G CC TT
DIYgenomics Citizen Science – Join Us! ,[object Object],[object Object],[object Object],[object Object],[object Object],June 12, 2010 DIYgenomics.org Image credit: http://www.uchsc.edu/vivat/2006/September2006/images/DNA_strand.jpg
Thank you! Melanie Swan Founder DIYgenomics +1-650-681-9482 @DIYgenomics www.DIYgenomics.org [email_address] Slides: http://slideshare.net/LaBlogga/slideshows Creative Commons 3.0 license Collaborators:  Raymond McCauley Lucymarie Mantese Marat Nepomnyashy Roland Parnaso Aaron Vollrath Lawrence S. Wong  Crowd-sourced clinical trials Personal genome apps
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Democratizing the genome

  • 1. Democratizing the Genome Melanie Swan Founder DIYgenomics +1-650-681-9482 @DIYgenomics www.DIYgenomics.org [email_address] June 12, 2010 H+ Summit, Harvard University Slides: http://slideshare.net/LaBlogga/slideshows
  • 2.
  • 3. We are standing in a new era June 12, 2010 DIYgenomics.org 1999-2009: cost of DNA sequencing decreased 14,000x. April 1, 2010. Image credit: http://pubs.acs.org/cen/_img/87/i50/8750cover2_law.gif Dec. 14, 2009
  • 4. A new construct of biocitizen identity June 12, 2010 DIYgenomics.org Source: Extended from Swan, M. Emerging patient-driven health care models: an examination of health social networks, consumer personalized medicine and quantified self-tracking. Int. J. Environ. Res. Public Health 2009 , 2, 492-525, Figure 1.
  • 5.
  • 6. 3 rd and 4 th generation sequencing arrives June 12, 2010 DIYgenomics.org 3 rd Gen: Sequencing by Synthesis 2 nd Gen: Parallelized sequencing 1 st Gen: Sanger Sequencing 4 th Gen: Electronic Synthesis Sources: http://www.genomicseducation.ca/files/images/information_articles/sequencing.gif, http://www.wellcome.ac.uk/News/2009/Features/WTX056032.htm, http://www.pacificbiosciences.com/video_lg.html, http://www.nanoporetech.com/sequences
  • 7.
  • 8.
  • 9.
  • 10.
  • 11.
  • 12. Thank you! Melanie Swan Founder DIYgenomics +1-650-681-9482 @DIYgenomics www.DIYgenomics.org [email_address] Slides: http://slideshare.net/LaBlogga/slideshows Creative Commons 3.0 license Collaborators: Raymond McCauley Lucymarie Mantese Marat Nepomnyashy Roland Parnaso Aaron Vollrath Lawrence S. Wong Crowd-sourced clinical trials Personal genome apps