Cytoscape プロジェクト現状報告 2011年2月

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Cytoscapeプロジェクト周辺の現状報告。ナラプロテクノロジーズ様でのユーザーミーティング資料。

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  • Cytoscape プロジェクト現状報告 2011年2月

    1. 1. Cytoscape Q&A Keiichiro Ono UC, San Diego Dept. of MedicineNational resource for network biology
    2. 2. • • • Cytoscape 2.x • Cytoscape 3.x • Cytoscape Web•• Q&A
    3. 3. • • Java • Cytoscape 2.8.1 • Cytoscape 3 Alpha 1 Dev. Release • Web • Cytoscpe Web ver. 0.7.1
    4. 4. • • NIH P-41 ($6.5 mil.) • National Resource for Network Biology (NRNB) • http://nrnb.org/
    5. 5. P-41• • • •
    6. 6. 2.8.1•••
    7. 7. 3.0.0 Alpha Dev. Release•••
    8. 8. Cytoscape Web• Flash• Java Cytoscape•• WEB• JavaScript
    9. 9. Web• • •• ➡ (XGMML/GraphML)
    10. 10. 1. <html>2. <head> </head>3. <body>4.  5. <h1>Sample</h1>6. <div id="cytoWebContent" style="width: 600px;height: 400px;"></div>7.  8. <script type="text/javascript">9.     var options = { swfPath: "path/to/swf/CytoscapeWeb",10.                     flashInstallerPath: "path/to/swf/playerProductInstall",11.                     flashAlternateContent: "Le Flash Player est nécessaire." };12.                     13.     var vis = new org.cytoscapeweb.Visualization("cytoWebContent", options);14.     15.     vis.draw({ network: <graphml>...</graphml> });16. </script>17.  18. </body>19. <html>
    11. 11. GENEMANIA
    12. 12. 2: ATTED-II
    13. 13. • → 2.8.x• → 2.8.x• → 3.x• → 3.x• → Cytoscape Web
    14. 14. • • OSGi• API ••
    15. 15. • 3.0 • •• 2.x• Cytoscape Web
    16. 16. Cytoscape Retreat 2011• La Jolla, CA USA••
    17. 17. Cytoscpae Retreat 2012 Japan (?)••
    18. 18. Q&A
    19. 19. • • • • • Neo4j? •

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