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Mobyle 1.528 septembre 2012, Institut Pasteur
What is Mobyle
Whats new in Mobyle 1.5●   Workspace management●   Multiple data●   Tutorials●   BMID●   BMPS●   Availability
Advanced workspace management● it becomes hard to navigate and manage user data and  jobs:   ○ jobs have generic names: se...
Advanced workspace management                           Bookmark as "x"   Generic job/ bookmark          names
Advanced workspace management        Rename jobs             Remove or sort jobs / data   (click on the pen icon)   bookma...
Advanced workspace management    Rename jobs
Advanced workspace management    Job is renamed
Advanced workspace management     jobs/data bookmarks can also be renamed in the Overview panels
"Multiple" data● Sometimes a program accepts a list of n files as input● In Mobyle 1.0.x, it is not possible to specify th...
"Multiple" data Three databoxes let you specify three     files at most as program input
"Multiple" data                          You can add new databoxes "on                             the fly" with the [+] b...
"Multiple" dataThe order of the inputs is preserved through   Two files have been used as input      the order on the comm...
"Multiple" data You specify a "multiple" type by merely       Process the value using the separator and theadding the "Mul...
Tutorials● Tutorials in Mobyle 1.0.x are hard-coded: a limited list of  HTML pages● Depending on the context of each serve...
Tutorials                                              Tutorials are HTML web pagesTutorials can be added, classified and ...
Tutorials            Locally stored dependencies can be stored            in a local directory that has the same name     ...
Visualization/Edition Widgets
Edition and chaining
Export snapshots
Roadmap● Edition widgets: Mobyle 1.0.5+, May 2012● BMID● BMPS      Mobyle 1.5, September 2012Availability                 ...
Mobyle distributionfrom 1.5 version Mobyle exists in two flavors:● Mobyle+BCBB-1.xx.tar.gz .   With BMID (programs editor)...
AcknowledgementsNIAID: BMID and BMPS developmentNick WeberRamandeep KaurJanet HeJennifer DommerGenOuest: packaging effort ...
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Mobyle 1.5 - Mobyle Workshop - September 28, 2012

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Mobyle 1.5 - Mobyle Workshop - September 28, 2012

  1. 1. Mobyle 1.528 septembre 2012, Institut Pasteur
  2. 2. What is Mobyle
  3. 3. Whats new in Mobyle 1.5● Workspace management● Multiple data● Tutorials● BMID● BMPS● Availability
  4. 4. Advanced workspace management● it becomes hard to navigate and manage user data and jobs: ○ jobs have generic names: service name + date ○ data sometimes have generic names: parameter name or file name ○ regular users can have large numbers of jobs and data stored in their workspace● solution: provide a way for users to easily rename their important jobs/data or remove the ones which are useless
  5. 5. Advanced workspace management Bookmark as "x" Generic job/ bookmark names
  6. 6. Advanced workspace management Rename jobs Remove or sort jobs / data (click on the pen icon) bookmarks in the overview panel
  7. 7. Advanced workspace management Rename jobs
  8. 8. Advanced workspace management Job is renamed
  9. 9. Advanced workspace management jobs/data bookmarks can also be renamed in the Overview panels
  10. 10. "Multiple" data● Sometimes a program accepts a list of n files as input● In Mobyle 1.0.x, it is not possible to specify this behaviour● The workaround is to create web interfaces with a fixed but limited number of parameters which will be translated into files● not flexible enough!
  11. 11. "Multiple" data Three databoxes let you specify three files at most as program input
  12. 12. "Multiple" data You can add new databoxes "on the fly" with the [+] button You can remove them with the "remove" button
  13. 13. "Multiple" dataThe order of the inputs is preserved through Two files have been used as input the order on the command line for the same parameter
  14. 14. "Multiple" data You specify a "multiple" type by merely Process the value using the separator and theadding the "Multiple" prefix to the datatype command line formatting code in <format>
  15. 15. Tutorials● Tutorials in Mobyle 1.0.x are hard-coded: a limited list of HTML pages● Depending on the context of each server, one might want to add/remove such pages: ○ to provide help pages about a given service ○ to explain a given use-case● This requires the modification of Mobyle code (portal templates) which is overwritten on each update and may even break it altogether.● not flexible enough!
  16. 16. Tutorials Tutorials are HTML web pagesTutorials can be added, classified and which can now be deployed the same way searched the same way as the other as others "services"
  17. 17. Tutorials Locally stored dependencies can be stored in a local directory that has the same name as the XML file, minus its extension (just like viewers/widgets) A tutorial is a service XML consisting mostly of an <interface> tag that contains the displayed HTML
  18. 18. Visualization/Edition Widgets
  19. 19. Edition and chaining
  20. 20. Export snapshots
  21. 21. Roadmap● Edition widgets: Mobyle 1.0.5+, May 2012● BMID● BMPS Mobyle 1.5, September 2012Availability http://bit.ly/NyVaUl $apt-get install mobyle http://bit.ly/PTG0N7
  22. 22. Mobyle distributionfrom 1.5 version Mobyle exists in two flavors:● Mobyle+BCBB-1.xx.tar.gz . With BMID (programs editor) and BMPS(user graphical workflows)● Mobyle-1.xx.tar.gz . Without BMID (programs editor) and BMPS(user graphical workflows)
  23. 23. AcknowledgementsNIAID: BMID and BMPS developmentNick WeberRamandeep KaurJanet HeJennifer DommerGenOuest: packaging effort and more...Olivier Sallou

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