Facilitating Standardization And Exchange Of Array Design 19 08 2004

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Facilitating Standardization And Exchange Of Array Design 19 08 2004

  1. 1. Facilitating Standardization and Exchange of Array Design MAGEML2ADF 19 th August 2004
  2. 2. MAGE Identifier creation <ul><li>Following an expression in configuration file </li></ul><ul><ul><li>One general rule </li></ul></ul><ul><ul><ul><li>uk.ac.ebiMIAMExpress/@ objectType =A-ABC-000.@ objectTypeInitial -@ objectNumber </li></ul></ul></ul><ul><ul><li>Possibility of a rule for each Object type </li></ul></ul><ul><ul><ul><li>Database : uk.ac.ebiMIAMExpress/Database:@ DBTag </li></ul></ul></ul>
  3. 3. ADF To MAGE-ML conversion <ul><li>-> MAGE-ML creation from adh file </li></ul><ul><li>->validated against MAGE DTD </li></ul><ul><li>From MAGEstk: creation of a temporary file in temp directory (raw data) </li></ul><ul><li>=> Creation of a pretty XML </li></ul>
  4. 4. <ul><li>Next: </li></ul><ul><ul><li>Creation of MAGE-ML file from adh and adc file </li></ul></ul><ul><ul><li>Managing directory in input (numbers of files and lonely adr and adh) </li></ul></ul><ul><ul><ul><li>Optional sorting of ADF, by creation of sub-directory </li></ul></ul></ul><ul><li>Time table: </li></ul><ul><ul><li>End of August : ADF to MAGE-ML </li></ul></ul><ul><ul><li>Mid of september: </li></ul></ul>

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