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Facilitating Standardization And Exchange Of Array Design 12 08 2004

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Facilitating Standardization And Exchange Of Array Design 12 08 2004

  1. 1. Facilitating Standardization and Exchange of Array Design MAGEML2ADF 12 th August 2004
  2. 2. ADF Converter Specification <ul><li>ADF/MAGE-ML converter </li></ul><ul><li>Standalone application </li></ul><ul><li>Automatic curation </li></ul><ul><li>Error log for correction </li></ul><ul><li>focused on usual application case: G.E., C.G.H and ChIP. </li></ul>
  3. 3. Modules <ul><li>Common tool module </li></ul><ul><ul><li>File reader/writer </li></ul></ul><ul><ul><li>Configuration </li></ul></ul><ul><ul><li>Update </li></ul></ul><ul><ul><li>Logging </li></ul></ul><ul><li>Checking module </li></ul><ul><li>Conversion module </li></ul><ul><ul><li>MAGE identifier generator </li></ul></ul>
  4. 4. The Checking module <ul><li>File structure Definition in a XML file </li></ul><ul><ul><li>DBTag – AccessionNumber </li></ul></ul><ul><ul><li>MGED ontology term </li></ul></ul><ul><ul><li>DocumentStructure.xsd </li></ul></ul>
  5. 5. <ul><li>Started date: May 4th </li></ul><ul><li>Ending date : November 1th </li></ul><ul><ul><li>Common modules </li></ul></ul><ul><ul><li>File checking </li></ul></ul><ul><ul><li>Currently : ADF to MAGE-ML conversion </li></ul></ul>

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