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OS16 - 4.P4.g Establishment and Validation of Two Duplex One-Step Real-Time RT-PCR Assays for Diagnosis of FMD - L. Bakkali-Kassimi

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OS16 - 4.P4.g Establishment and Validation of Two Duplex One-Step Real-Time RT-PCR Assays for Diagnosis of FMD - L. Bakkali-Kassimi

  1. 1. Open Session of the EuFMD - Cascais –Portugal 26-28 October 2016 ESTABLISHMENT AND VALIDATION OF TWO DUPLEX ONE-STEP REAL-TIME RT-PCR ASSAYS FOR DIAGNOSIS OF FOOT-AND-MOUTH DISEASE Kamila Gorna, Anthony Relmy, Aurore Romey, Eve Laloy, Stephan Zientara, Sandra Blaise-Boisseau, Labib Bakkali-Kassimi Université Paris-Est, Anses, Laboratoire de Santé Animale, Laboratoire OIE de référence FMD, UMR1161 Virologie (Anses-Inra-Enva), 14 Rue Pierre et Marie Curie 94700 Maisons-Alfort, France Contact : labib.bakkali-kassimi@anses.fr
  2. 2. OS16
  3. 3. OS16 3DL VP4 VP2 VP3 2A 2B 2C 3A 3B 3CVP1 VPg 5’ 3’ IRES 3B 3B Conserved region within all FMDV serotypes 1- Mix IRES/B-actin 2- Mix 3D/B-actin Conserved region within all FMDV serotypesMastermix Internally controlled one-step rtRT-PCR RNA 5 µl 20 µl  Master mix with all reagents  Can be aliquoted  Stable for at least one year
  4. 4. ONE-STEP DUPLEX rtRT-PCR  Ensuring adequate efficiency of RNA extraction  Confirming the absence of PCR-inhibitors in each sample,  Less handling means less cross-contaminations  Tests can be produced in advance as a ready-to- use master mix, which can be controlled before use and stored at−20◦C as an aliquot, making diagnostic results more reproducible and accurate.  Can be easily implemented in routine analysis  Automated
  5. 5. OS16 Validated according to OIE and ISO/IEC 17025 standards Accredited under ISO/IEC 17025  Analytical specificity (ASp): Seven FMDV serotypes are detected. None amplification for SVDV and VSV strains  Analytical sensitivity (Asn)/ Limit of detection (LoD): LoD PCR = 7 TCID50/ml et LoD METHODE = 50 copies RNA  Diagnostic sensitivity (DSn): (positives n=40) 100% (3D); 97% (IRES)  Diagnostic specificity (DSp): (negatives n=79) 100% (3D and IRES)  Repeatability intra et inter assays: (CV max intra = 2,96; CV max inter =6,73) Master mix was provided to some laboratories Method available : Gorna K. et al. 2016, J Virol Methods. doi: 10.1016/j.jviromet.2016.03.020
  6. 6. OS16 Would like to know more ? Look at the poster
  7. 7. OS16 Sandra Blaise Boisseau Anthony Relmy Aurore Romey Eve Laloy Kamila Gorna Thank you for your attention

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