THRIVE: Pollution Viewer

David Lary
David LaryProfessor at The University of Texas at Dallas
T H R I V E
T I M E LY H E A LT H I N D I C AT O R S U S I N G R E M O T E S E N S I N G &
I N N O VAT I O N F O R T H E V I TA L I T Y O F T H E E N V I R O N M E N T
Why we care so much?
Approximately 50 million Americans have
allergic diseases, including asthma and
allergic rhinitis, both of which can be
exacerbated by PM2.5.
Every day in America 44,000 people have an
asthma attack, and because of asthma
36,000 kids miss school, 27,000 adults miss
work, 4,700 people visit the emergency
room, 1,200 people are admitted to the
hospital, and 9 people die.
THRIVE: Pollution Viewer
THRIVE: Pollution Viewer
PM2.5 Invisible Killer
THRIVE: Pollution Viewer
TypesofbiologicalMaterialTypesofDustTypesofParticulatesGasMolecules
0.0001 μm 0.001 μm 0.01 μm 0.1 μm 1 μm 10 μm 100 μm 1000 μm
Pollen
Mold Spores
House Dust Mite Allergens
Bacteria
Cat Allergens
Viruses
Heavy Dust
Settling Dust
Suspended Atmospheric Dust
Cement Dust
Fly Ash
Oil Smoke
Smog
Tobacco Smoke
Soot
Gas Molecules
Decreased Lung Function < 10 μm
Skin & Eye Disease < 2.5 μm
Tumors < 1 μm
Cardiovascular Disease < 0.1 μm
Hair
Pin
Cell
0.0001 μm 0.001 μm 0.01 μm 0.1 μm 1 μm 10 μm 100 μm 1000 μm
PM10 particles
PM2.5 particles
PM0.1 ultra fine particles PM10-2.5 coarse fraction
0.1 mm 1 mm
Table!1.!PM!and!health!outcomes!(modified!from!Ruckerl*et*al.!(2006)).!
!!
Health*Outcomes!
Short9term*Studies* Long9term*Studies*
PM10! PM2.5! UFP! PM10! PM2.5! UFP!
Mortality* !! !! !! !! !! !!
!!!!All!causes! xxx!! xxx!! x! xx! xx! x!
!!!!Cardiovascular! xxx! xxx! x!! xx! xx! x!
!!!!Pulmonary! xxx! xxx! x! xx! xx! x!
Pulmonary!effects! !! !! !! !! !! !!
!!!!Lung!function,!e.g.,!PEF! xxx! xxx! xx! xxx! xxx! !!
!!!!Lung!function!growth! !! !! !! xxx! xxx! !!
Asthma!and!COPD!exacerbation! !! !! !! !! !! !!
!!!!Acute!respiratory!symptoms! !! xx! x! xxx! xxx! !!
!!!!Medication!use! !! !! x! !! !! !!
!!!!Hospital!admission! xx! xxx! x! !! !! !!
Lung!cancer! !! !! !! !! !! !!
!!!!Cohort! !! !! !! xx! xx! x!
!!!!Hospital!admission! !! !! !! xx! xx! x!
Cardiovascular!effects! !! !! !! !! !! !!
!!!!Hospital!admission! xxx! xxx! !! x! x! !!
ECG@related!endpoints! !! !! !! !! !! !!
!!!!Autonomic!nervous!system! xxx! xxx! xx! !! !! !!
!!!!Myocardial!substrate!and!vulnerability! !! xx! x! !! !! !!
Vascular!function! !! !! !! !! !! !!
!!!!Blood!pressure! xx! xxx! x! !! !! !!
!!!!Endothelial!function! x! xx! x! !! !! !!
Blood!markers! !! !! !! !! !! !!
!!!!Pro!inflammatory!mediators! xx! xx! xx! !! !! !!
!!!!Coagulation!blood!markers! xx! xx! xx! !! !! !!
!!!!Diabetes! x! xx! x! !! !! !!
!!!!Endothelial!function! x! x! xx! !! !! !!
Reproduction! !! !! !! !! !! !!
!!!!Premature!birth! x! x! !! !! !! !!
!!!!Birth!weight! xx! x! !! !! !! !!
!!!!IUR/SGA! x! x! !! !! !! !!
Fetal!growth! !! !! !! !! !! !!
!!!!Birth!defects! x! !! !! !! !! !!
!!!!Infant!mortality! xx! x! !! !! !! !!
!!!!Sperm!quality! x! x! !! !! !! !!
Neurotoxic!effects! !! !! !! !! !! !!
!!!!Central!nervous!system!! !! x! xx! !! !! !!
x, few studies; xx, many studies; xxx, large number of studies.
Hourly Measurements from 55 countries and more than 8,000 measurement sites from 1997-present
Aqua DeepBlue
Rank Source Variable Type
1 Satellite Product Tropospheric NO2 Column Input
2 Satellite Product Solar Azimuth Input
3 Meteorological Analyses Air Density at Surface Input
4 Satellite Product Sensor Zenith Input
5 Satellite Product White-sky Albedo at 470 nm Input
6 Population Density Input
7 Satellite Product Deep Blue Surface Reflectance 470 nm Input
8 Meteorological Analyses Surface Air Temperature Input
9 Meteorological Analyses Surface Ventilation Velocity Input
10 Meteorological Analyses Surface Wind Speed Input
11 Satellite Product White-sky Albedo at 858 nm Input
12 Satellite Product White-sky Albedo at 2,130 nm Input
13 Satellite Product Solar Zenith Input
14 Meteorological Analyses Surface Layer Height Input
15 Satellite Product White-sky Albedo at 1,240 nm Input
16 Satellite Product Deep Blue Surface Reflectance 660 nm Input
17 Satellite Product Deep Blue Surface Reflectance 412 nm Input
18 Satellite Product White-sky Albedo at 1,640 nm Input
19 Satellite Product Sensor Azimuth Input
20 Satellite Product Scattering Angle Input
21 Meteorological Analyses Surface Velocity Scale Input
22 Satellite Product Cloud Mask Qa Input
23 Satellite Product White-sky Albedo at 555 nm Input
24 Satellite Product Deep Blue Aerosol Optical Depth 550 nm Input
25 Satellite Product Deep Blue Aerosol Optical Depth 660 nm Input
26 Satellite Product Deep Blue Aerosol Optical Depth 412 nm Input
27 Meteorological Analyses Total Precipitation Input
28 Satellite Product White-sky Albedo at 648 nm Input
29 Satellite Product Deep Blue Aerosol Optical Depth 470 nm Input
30 Satellite Product Deep Blue Angstrom Exponent Land Input
31 Meteorological Analyses Surface Specific Humidity Input
32 Satellite Product Cloud Fraction Land Input
In-situ Observation PM2.5 Target
This is a BigData Problem of
Great Societal Relevance
• Collecting data in real time from national and
global networks requires bandwidth.
• With the next generation of wearable sensors and
the internet of things this data volume will rapidly
increase.
• A variety of applications enabled by BigData,
higher bandwidth and cloud processing.
• Future finer granularity and two way
communication will dramatically increase the size
of the data bringing air quality to the micro scale,
just like weather data.
Time Taken
10 Mbps 20 Mbps 50 Mbps 1 Gbps
40 TB training data
4 Gb update
185 days 93 days 37 days 1 day 21 hours
54m 27m 11m 32s
Long-Term Average 1997-present
Think Big: Holistic & Comprehensive Informatics
Bio	
  Informa+cs
Medical	
  Informa+cs
Environmental	
  Informa+cs
THRIVE	
  
Mul+ple	
  Big	
  Data	
  +	
  EMR	
  +	
  Social	
  Media	
  +	
  Machine	
  Learning	
  +	
  Causality	
  
A	
  Cross-­‐cuBng	
  PlaDorm	
  for	
  Comprehensive	
  Informa+cs	
  for	
  Data	
  Driven	
  Decisions	
  in	
  Pa4ent	
  
Centered	
  Care	
  facilitated	
  by	
  High	
  Speed	
  Low-­‐Latency	
  networks,	
  mul+ple	
  massive	
  datasets	
  from	
  
large	
  distributed	
  sensor	
  networks,	
  EMR,	
  and	
  local	
  cloud	
  compu:ng.
12
VA Decision Support Tools
More Than 40 Data Products from In-situ Observations, NASA Earth Observations, Earth System
Models, Population Density & Emission Inventories
Personalized Alerts Dr. Watson
Staffing & Resource
Management
Machine Learning
Daily Global Air
Quality Estimates
NASA Earth
Observation Data
NASA Earth System
Model Products
Population Density and
Other Related Products
ER Admissions
All ICD Codes
All Prescriptions
Machine
Learning
Machine
Learning
THRIVE Medical
Environment Analytics
Engine
1 of 12

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THRIVE: Pollution Viewer

  • 1. T H R I V E T I M E LY H E A LT H I N D I C AT O R S U S I N G R E M O T E S E N S I N G & I N N O VAT I O N F O R T H E V I TA L I T Y O F T H E E N V I R O N M E N T Why we care so much? Approximately 50 million Americans have allergic diseases, including asthma and allergic rhinitis, both of which can be exacerbated by PM2.5. Every day in America 44,000 people have an asthma attack, and because of asthma 36,000 kids miss school, 27,000 adults miss work, 4,700 people visit the emergency room, 1,200 people are admitted to the hospital, and 9 people die.
  • 6. TypesofbiologicalMaterialTypesofDustTypesofParticulatesGasMolecules 0.0001 μm 0.001 μm 0.01 μm 0.1 μm 1 μm 10 μm 100 μm 1000 μm Pollen Mold Spores House Dust Mite Allergens Bacteria Cat Allergens Viruses Heavy Dust Settling Dust Suspended Atmospheric Dust Cement Dust Fly Ash Oil Smoke Smog Tobacco Smoke Soot Gas Molecules Decreased Lung Function < 10 μm Skin & Eye Disease < 2.5 μm Tumors < 1 μm Cardiovascular Disease < 0.1 μm Hair Pin Cell 0.0001 μm 0.001 μm 0.01 μm 0.1 μm 1 μm 10 μm 100 μm 1000 μm PM10 particles PM2.5 particles PM0.1 ultra fine particles PM10-2.5 coarse fraction 0.1 mm 1 mm Table!1.!PM!and!health!outcomes!(modified!from!Ruckerl*et*al.!(2006)).! !! Health*Outcomes! Short9term*Studies* Long9term*Studies* PM10! PM2.5! UFP! PM10! PM2.5! UFP! Mortality* !! !! !! !! !! !! !!!!All!causes! xxx!! xxx!! x! xx! xx! x! !!!!Cardiovascular! xxx! xxx! x!! xx! xx! x! !!!!Pulmonary! xxx! xxx! x! xx! xx! x! Pulmonary!effects! !! !! !! !! !! !! !!!!Lung!function,!e.g.,!PEF! xxx! xxx! xx! xxx! xxx! !! !!!!Lung!function!growth! !! !! !! xxx! xxx! !! Asthma!and!COPD!exacerbation! !! !! !! !! !! !! !!!!Acute!respiratory!symptoms! !! xx! x! xxx! xxx! !! !!!!Medication!use! !! !! x! !! !! !! !!!!Hospital!admission! xx! xxx! x! !! !! !! Lung!cancer! !! !! !! !! !! !! !!!!Cohort! !! !! !! xx! xx! x! !!!!Hospital!admission! !! !! !! xx! xx! x! Cardiovascular!effects! !! !! !! !! !! !! !!!!Hospital!admission! xxx! xxx! !! x! x! !! ECG@related!endpoints! !! !! !! !! !! !! !!!!Autonomic!nervous!system! xxx! xxx! xx! !! !! !! !!!!Myocardial!substrate!and!vulnerability! !! xx! x! !! !! !! Vascular!function! !! !! !! !! !! !! !!!!Blood!pressure! xx! xxx! x! !! !! !! !!!!Endothelial!function! x! xx! x! !! !! !! Blood!markers! !! !! !! !! !! !! !!!!Pro!inflammatory!mediators! xx! xx! xx! !! !! !! !!!!Coagulation!blood!markers! xx! xx! xx! !! !! !! !!!!Diabetes! x! xx! x! !! !! !! !!!!Endothelial!function! x! x! xx! !! !! !! Reproduction! !! !! !! !! !! !! !!!!Premature!birth! x! x! !! !! !! !! !!!!Birth!weight! xx! x! !! !! !! !! !!!!IUR/SGA! x! x! !! !! !! !! Fetal!growth! !! !! !! !! !! !! !!!!Birth!defects! x! !! !! !! !! !! !!!!Infant!mortality! xx! x! !! !! !! !! !!!!Sperm!quality! x! x! !! !! !! !! Neurotoxic!effects! !! !! !! !! !! !! !!!!Central!nervous!system!! !! x! xx! !! !! !! x, few studies; xx, many studies; xxx, large number of studies.
  • 7. Hourly Measurements from 55 countries and more than 8,000 measurement sites from 1997-present
  • 8. Aqua DeepBlue Rank Source Variable Type 1 Satellite Product Tropospheric NO2 Column Input 2 Satellite Product Solar Azimuth Input 3 Meteorological Analyses Air Density at Surface Input 4 Satellite Product Sensor Zenith Input 5 Satellite Product White-sky Albedo at 470 nm Input 6 Population Density Input 7 Satellite Product Deep Blue Surface Reflectance 470 nm Input 8 Meteorological Analyses Surface Air Temperature Input 9 Meteorological Analyses Surface Ventilation Velocity Input 10 Meteorological Analyses Surface Wind Speed Input 11 Satellite Product White-sky Albedo at 858 nm Input 12 Satellite Product White-sky Albedo at 2,130 nm Input 13 Satellite Product Solar Zenith Input 14 Meteorological Analyses Surface Layer Height Input 15 Satellite Product White-sky Albedo at 1,240 nm Input 16 Satellite Product Deep Blue Surface Reflectance 660 nm Input 17 Satellite Product Deep Blue Surface Reflectance 412 nm Input 18 Satellite Product White-sky Albedo at 1,640 nm Input 19 Satellite Product Sensor Azimuth Input 20 Satellite Product Scattering Angle Input 21 Meteorological Analyses Surface Velocity Scale Input 22 Satellite Product Cloud Mask Qa Input 23 Satellite Product White-sky Albedo at 555 nm Input 24 Satellite Product Deep Blue Aerosol Optical Depth 550 nm Input 25 Satellite Product Deep Blue Aerosol Optical Depth 660 nm Input 26 Satellite Product Deep Blue Aerosol Optical Depth 412 nm Input 27 Meteorological Analyses Total Precipitation Input 28 Satellite Product White-sky Albedo at 648 nm Input 29 Satellite Product Deep Blue Aerosol Optical Depth 470 nm Input 30 Satellite Product Deep Blue Angstrom Exponent Land Input 31 Meteorological Analyses Surface Specific Humidity Input 32 Satellite Product Cloud Fraction Land Input In-situ Observation PM2.5 Target
  • 9. This is a BigData Problem of Great Societal Relevance • Collecting data in real time from national and global networks requires bandwidth. • With the next generation of wearable sensors and the internet of things this data volume will rapidly increase. • A variety of applications enabled by BigData, higher bandwidth and cloud processing. • Future finer granularity and two way communication will dramatically increase the size of the data bringing air quality to the micro scale, just like weather data. Time Taken 10 Mbps 20 Mbps 50 Mbps 1 Gbps 40 TB training data 4 Gb update 185 days 93 days 37 days 1 day 21 hours 54m 27m 11m 32s
  • 11. Think Big: Holistic & Comprehensive Informatics Bio  Informa+cs Medical  Informa+cs Environmental  Informa+cs THRIVE   Mul+ple  Big  Data  +  EMR  +  Social  Media  +  Machine  Learning  +  Causality   A  Cross-­‐cuBng  PlaDorm  for  Comprehensive  Informa+cs  for  Data  Driven  Decisions  in  Pa4ent   Centered  Care  facilitated  by  High  Speed  Low-­‐Latency  networks,  mul+ple  massive  datasets  from   large  distributed  sensor  networks,  EMR,  and  local  cloud  compu:ng.
  • 12. 12 VA Decision Support Tools More Than 40 Data Products from In-situ Observations, NASA Earth Observations, Earth System Models, Population Density & Emission Inventories Personalized Alerts Dr. Watson Staffing & Resource Management Machine Learning Daily Global Air Quality Estimates NASA Earth Observation Data NASA Earth System Model Products Population Density and Other Related Products ER Admissions All ICD Codes All Prescriptions Machine Learning Machine Learning THRIVE Medical Environment Analytics Engine