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Next-generation sequencing request management system in Galaxy

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Next-generation sequencing request management system in Galaxy

  1. 1. Goal Usage Implementation Availability Next-generation sequencing request management system in Galaxy Brad Chapman 16 May 2010
  2. 2. Goal Usage Implementation Availability Researchers Sequencing Core Samples Analysis
  3. 3. Goal Usage Implementation Availability Sample and request infrastructure
  4. 4. Goal Usage Implementation Availability Functionality Researcher sample entry Sequencing tracking and management Layout of flow cells Full integration with Galaxy
  5. 5. Goal Usage Implementation Availability Multiple services
  6. 6. Goal Usage Implementation Availability Sample entry
  7. 7. Goal Usage Implementation Availability Organize as projects
  8. 8. Goal Usage Implementation Availability Project based view
  9. 9. Goal Usage Implementation Availability Tracking and management
  10. 10. Goal Usage Implementation Availability Flow cell layout
  11. 11. Goal Usage Implementation Availability Leverages Galaxy infrastructure Display Database grids samples form builder requests events form values Added to database One relationship table
  12. 12. Goal Usage Implementation Availability Sample request relationships Next-gen Next-gen Requests: Sequencing Sequencing Run 1 Run 2 Sample 2 Sample Sample 3 Library Pre-sequencing Sequencing Sequencing Requests: Construction Validation quantitation Sequencing Details results 1 results 2
  13. 13. Goal Usage Implementation Availability Community Positives Suggestions Consistent High level update interface summaries Excellent backend Internals Maintainability documentation Roadmap
  14. 14. Goal Usage Implementation Availability Availability Repository tracking Galaxy development http://bitbucket.org/chapmanb/ galaxy-central Hope to integrate with the main code base

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