F05-Cloud-Sequencescape

778 views

Published on

Sequencescape - a cloud enabled laboratory information management system (LIMS) for second and third generation sequencing

Published in: Technology, Business
0 Comments
0 Likes
Statistics
Notes
  • Be the first to comment

  • Be the first to like this

No Downloads
Views
Total views
778
On SlideShare
0
From Embeds
0
Number of Embeds
1
Actions
Shares
0
Downloads
8
Comments
0
Likes
0
Embeds 0
No embeds

No notes for slide

F05-Cloud-Sequencescape

  1. 1. Sequencescape Lars G. T. Jorgensen <lj3@sanger.ac.uk>
  2. 2. Faculty view DNA pipelines
  3. 3. •  Support every technology on the block•  Primary pipelines are Solexa sequencing and Genotyping•  Working at a different scale then most people
  4. 4. Sample management / Reporting LIMS Run tracking/ Data QC Data archiving Data analysis Data release
  5. 5. Faculty IT view
  6. 6. Key parts of LIMS•  Freezer tracking •  Automation•  Aliquot tracking •  Data release•  Information capture •  Reporting•  Study management •  Reagent tracking•  Capacity •  Liquid handling management •  Workflows•  Back office
  7. 7. Organization of information created from contains released as based on created from child parent payed for by processed in
  8. 8. Creating new lab pipelines
  9. 9. Development•  Incremental release every two weeks. Larger projects run in more classical way.•  Developed directly on github
  10. 10. Show stoppers for sharing•  Local dependencies•  Differences in protocols•  Not wanting to share what is being done•  Trying to externalise them were possible
  11. 11. Example: Creating a new pipeline
  12. 12. Alternatives•  Thermo Fisher – Nautilus•  Genologics•  WikiLIMS•  Excel or Google docs•  Sequencing companies/centers (still needs tracking)
  13. 13. Need your input •  What do you need from a LIMS? •  What information do you capture? •  What do you see the role of a LIMS being?http://www.sanger.ac.uk/resources/software/npghttp://github.com/sanger

×