Successfully reported this slideshow.
We use your LinkedIn profile and activity data to personalize ads and to show you more relevant ads. You can change your ad preferences anytime.
Upcoming SlideShare
G09-Misc-EMBOSS
G09-Misc-EMBOSS
Loading in …3
×
1 of 16

Bosc2011 arakawa

0

Share

Download to read offline

Related Books

Free with a 30 day trial from Scribd

See all

Related Audiobooks

Free with a 30 day trial from Scribd

See all

Bosc2011 arakawa

  1. 1. A presentation at the Bioinformatics Open Source Conference 2011
  2. 2. G-language Project Keio University Cornell University Genome Analysis Environment (GAE) Arakawa et al. (2003) Bioinformatics “EMBOSS in Perl” - collection of 100s of programs, API for I/O, graphing, statistics Perl Shell, BioPerl compatible Genome Projector Arakawa et al. (2009) BMC Bioinformatics Genome browser using Google Maps API Pathway Projector Kono et al. (2009) PLoS One Pathway browser / mapping tool using Google Maps API Bookmarklet Intuitive query tool for EMBOSS, GAE services ( >500) Databases (NCBI Entrez, KEGG, EB-eye, Bio2RDF) REST/SOAP REST/SOAP web service for GAE Arakawa et al. (2010) NAR Keio Bioinformatics Web Services Oshita et al. (2011) SCFBM KBWS EMBASSY package for 50 web service tools
  3. 3. G-language Project: the last 10 years Bioinformatics JPS GGG NAR WS issue ISMB Best original paper review review WS paper Poster Award RCES GEM System Bioinformatics BMC Bioinformatics Open-Bio.jp book CBI Conference Pathway marraydb cDNA GPAC MEGU Restauro-G Mashup Awards 4th Genome SFC Award Best Poster Award ISB GPB ISB ISB GPB CGR Projector Mashup Awards 6th KBWS Genome Projector Projector SCFBM PLoS One G-language Bookmarklet SCFBM Keio Presidential Award BMC Bioinformatics 2001 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 v.0.x v.1.0.x v.1.1.x v.1.2.x v.1.3.x v.1.4~5.x v.1.6.x v.1.7.x v.1.8.x G-language Shell Inspire v.1.49 release Windows support discontinued v.1.6 release MacOS X v.1.7 release Bluebird/Infinity 2011 KNOB CGR REST/SOAP KBWS GPAC cDNA Restauro 2 v.1.1 released Restauro-G Skyline core BioPerl compatibility g2s Moco GEM System E-Cell 3D v.1.8 release v.1.0.0 asimo release Shell + Web Service enhancements GUI (Linux/Windows) SplitsX marraydb MEGU Dynamic Loader ism Genome Projector plug-in function Pathway Projector Prelude core G-language Bookmarklet Odyssay Package g-language.org RCES
  4. 4. Statistics also distributed at bioinformatics.org, CPAN, KNOB, CD-ROM
  5. 5. Lessons leant...
  6. 6. updates!
  7. 7. Genome Projector Zoomable Genome Browser with Multiple Views powered by Google Maps API Mash up Awards 4 - Google Award Arakawa et al. (2009) BMC Bioinformatics
  8. 8. G-language Bookmarklet: The Gateway to Semantic Web. http://www.g-language.org/wiki/bookmarklet EMBOSS KBWS Wikipedia G-language Eijiro Google Bio2RDF PubMed EB-eye KEGG/LinkDB Entrez BLAST
  9. 9. and beyond...

×