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Bioschemas overview

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Overview of the Bioschemas Community Activity providing:
- Description of what Bioschemas is
- Details of adoption of Bioschemas
- Benefits of deploying Bioschemas

Slides presented as the introduction to the Bioschemas Tutorial delivered at ECCB 2018

Published in: Data & Analytics
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Bioschemas overview

  1. 1. Alasdair J G Gray Heriot-Watt University/ELIXIR-UK Bioschemas Community http://bioschemas.org/people/ Bioschemas: Enabling Findability & Interoperability
  2. 2. Google Search 2
  3. 3. Google Search 3
  4. 4. Google Dataset Search 4 https://toolbox.google.com/datasetsearch https://www.blog.google/products/search/making-it-easier-discover-datasets/
  5. 5. Schema.org: Semantic markup for web pages http://bioschemas.org Picture: Carole Goble, Turing Lecture 2018 4 June 2018 5
  6. 6. Schema for Datasets and Catalogs Schema definitions: • Dataset: A body of structured information describing some topic(s) of interest http://schema.org/Dataset – 91 properties • DataCatalog: A collection of datasets http://schema.org/DataCatalog – 91 properties 4 Oct 2017 @bioschemas 6 https://schema.org/Dataset
  7. 7. Schema for Datasets and Catalogs Google Profile • Dataset: 9 basic properties • DataCatalog: 1 property • DataDownload: 2 properties • Many more Generic types • Events • Jobs • ... 4 Oct 2017 @bioschemas 7
  8. 8. Bioschemas • Schema.org for life sciences –Introduce life sciences types • Use case driven –Finding data –Presenting search results –Metadata exchange • Minimum properties – 6 • Link to domain ontologies Specification on top of schema.org Layer of constrains + documentation + extensions Specification Data model Minimum information Controlled vocabularies Cardinality Documentation Examples New (properties | types) 4 June 2018 http://bioschemas.org 8
  9. 9. 4 June 2018 http://bioschemas.org 9
  10. 10. Bioschemas Community
  11. 11. 200+ People35PMs (fundin g) 18Working groups 18Events 15Specifications 12Code repositories 229GitHub issues 468Community emails 35Live deploys 6M+Pages Bioschemas Community
  12. 12. Mapping SpecificationUse cases Mockup Adoption Testing Application Bioschemas Process 4 June 2018 http://bioschemas.org 12
  13. 13. Mapping SpecificationUse cases Mockup Adoption Testing Application Bioschemas Process 4 June 2018 http://bioschemas.org 13
  14. 14. Bioschemas Deployments http://bioschemas.org/liveDeploys/ 4 June 2018 http://bioschemas.org 14 35Live deploys 6M+Pages
  15. 15. TeSS: Bioschemas in action http://bioschemas.org • Contact • Description • End date • Event Type • Host Institution • Location • Name • Start Date • … Bioschemas Event:
  16. 16. Identifiers.org: Bioschemas DataCatalog in action (future) ELIXIR All Hands 2018, June 2018, Berlin, Germany • Description • Keywords • Name • Provider • URL Bioschema DataCatalog: • alternateName • citation • dateCreated • licence • …
  17. 17. Prototype: MarRef → BioSamples Without an API 4 June 2018 http://bioschemas.org 17 https://github.com/EBIBioSamples/bioschemas_marref_demo/blob/master/Summary.md
  18. 18. Exploiting Bioschemas Markup: Tooling • buzzbang –Crawl markup –Search interface 4 June 2018 http://bioschemas.org 18 • GoWeb –Specification generation • Validata –Validate markup
  19. 19. Bioschemas 2018 and Beyond • Increase Adoption –Core Data Resources –Deposition Databases –Node Resources –Community Resources http://bioschemas.org4 June 2018 19 • Staff Exchange Programme –Travel fund for Bioschema events –Staff transfer • Training and Events –ECCB Tutorial –NetTab –Biohackathon –SWAT4HCLS Tutorial
  20. 20. Acknowledgements http://bioschemas.org/people/ 4 June 2018 http://bioschemas.org 20 Join Bioschemas bioschemas.org/ howtojoin/

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