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Bioschemas findability and interoperability

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Presentation given to the ELIXIR-EXCELERATE Interoperability Platform meeting at the ELIXIR All Hands meeting, Berlin, 2018.

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Bioschemas findability and interoperability

  1. 1. Alasdair J G Gray Heriot-Watt University/ELIXIR-UK Bioschemas Community http://bioschemas.org/people/ Bioschemas: Enabling Findability & Interoperability
  2. 2. Schema.org: Semantic markup for web pages http://bioschemas.org Picture: Carole Goble, Turing Lecture 2018 4 June 2018 2
  3. 3. Bioschemas • Schema.org for life sciences –Introduce life sciences types • Use case driven –Finding data –Presenting search results –Metadata exchange • Minimum properties – 6 • Link to domain ontologies Specification on top of schema.org Layer of constrains + documentation + extensions Specification Data model Minimum information Controlled vocabularies Cardinality Documentation Examples New (properties | types) 4 June 2018 http://bioschemas.org 3
  4. 4. 4 June 2018 http://bioschemas.org 4
  5. 5. 200+ People35PMs (funding) 18Working groups 18Events 15Specifications 12Code repositories 229GitHub issues 468Community emails 30Live deploys 6M+Pages Bioschemas Community
  6. 6. Mapping SpecificationUse cases Mockup Adoption Testing Application Bioschemas Process 4 June 2018 http://bioschemas.org 6
  7. 7. Bioschemas Deployments http://bioschemas.org/liveDeploys/ 4 June 2018 http://bioschemas.org 7 30Live deploys 6M+Pages
  8. 8. TeSS: Bioschemas in action http://bioschemas.org
  9. 9. Prototype: MarRef  BioSamples Without an API 4 June 2018 http://bioschemas.org 9 https://github.com/EBIBioSamples/bioschemas_marref_demo/blob/master/Summary.md
  10. 10. Exploiting Bioschemas Markup: Tooling • buzzbang –Crawl markup –Search interface • GoWeb –Specification generation • Validata –Validate markup 4 June 2018 http://bioschemas.org 10
  11. 11. Bioschemas 2018 and Beyond • Increase Adoption –Core Data Resources –Deposition Databases –Node Resources –Community Resources • Staff Exchange Programme –Travel fund for Bioschema events –Staff transfer • Training and Events –ECCB Tutorial –NetTab –Biohackathon http://bioschemas.org4 June 2018 11 Bioschemas Tutorial 15:30–17:30 Wednesday Peking Room
  12. 12. Acknowledgements http://bioschemas.org/people/ 4 June 2018 http://bioschemas.org 12 Join Bioschemas bioschemas.org/ howtojoin/ Join Bioschemas Steering Committee https://goo.gl/forms/ brrkVCmsDAAqkNJU2

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