Bioschemas community: Developing profiles over Schema.org to make life sciences resources more findable

Bioschemas
BioschemasBioschemas
Alasdair J G Gray
Heriot-Watt University
Bioschemas Community
http://bioschemas.org/people/
Bioschemas Community:
Developing profiles over Schema.org
to make life sciences resources
more findable
30 April 2018 #bioschemas 2
<div itemscope itemtype="http://schema.org/Recipe">
<h1 itemprop="name">Classic potato salad</h1>
<div itemprop="nutrition” itemscope
itemtype="http://schema.org/NutritionInformation">
Nutrition facts:
<span itemprop="calories">144 kcal</span>,
</div>
Ingredients:
- <span itemprop="recipeIngredient">800g small new potato</span>
- <span itemprop="recipeIngredient">3 shallot</span>
Schema.org: markup for web pages
RDFa
JSON-LD
Microdata
With markup
30 April 2018 #bioschemas 3
Bioschemas
• Schema.org for life sciences
–Introduce life sciences types
• Use case driven
–Finding data
–Presenting search results
–Metadata exchange
• Minimum properties – 6
• Link to domain ontologies
Specification on top of schema.org
Layer of constrains + documentation +
extensions Specification
Data model
Minimum information
Controlled vocabularies
Cardinality
Documentation
Examples
New (properties | types)
30 April 2018 #bioschemas 4
30 April 2018 #bioschemas 5
Bioschemas community
15Specifications
18Working
groups 12Code
repositories
18Events
229GitHub
issues
468Community
emails
49Data
resources
16Live
deploys
223People35PMs
(funding)
Bioschemas Community
30 April 2018 #bioschemas 7
Mapping SpecificationUse cases
Mockup
Adoption
Testing Application
Bioschemas Process
30 April 2018 #bioschemas 8
Bioschema Profiles
http://bioschemas.org/specifications/
30 April 2018 #bioschemas 9
New Types for Schema.org
30 April 2018 #bioschemas 10
30 April 2018 #bioschemas 12
Adoption: http://bioschemas.org/liveDeploys/
Acknowledgements
http://bioschemas.org/people/
30 April 2018 #bioschemas 13
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Bioschemas community: Developing profiles over Schema.org to make life sciences resources more findable

Editor's Notes

  1. Machine interpretable This example is with Microdata
  2. Currently no rich search results Would like something more like this
  3. Define use case Metadata crosswalk and mapping to schema.org Metadata providers Metadata registries Standards defining metadata Bioschemas specification Define minimum properties based on “finding” use cases Define cardinality and suggested controlled vocabularies Test with existing entries Adoption by data repositories and registries Applications
  4. Beacon Data Catalog Dataset Event Laboratory Protocol Organization Person Phenotype Protein Protein Annotation Protein Structure Sample Standard Tool Training Material