Shifting from Tool Hackathons to Data Hackathons. Presented at the Dream - Recomb Satellite meeting

1. Ben Busby, Ph.D.
Data Science Education Something…
NCBI et al
Founder, Department of Bioinformatics and Data Science, FAES
ben.busby@nih.gov, @dcgenomics, LinkedIn
Making the Transition from Sharing Data to Sharing Knowledge

2. Polygenic SNP Search Tool
https://github.com/NCBI-
Hackathons/PSST

3. 3

4. https://github.com/NCBI-
Hackathons/GenomicRobots

5. https://github.com/NCBI-Hackathons/Complex_Phenogeno

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7. phenvar.colorado.edu

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9. Combined score is
the average of SVs,
mappability, GC..
NCBI region list
Encode blacklist

12. https://github.com/NCBI-
Hackathons/ViruSpy

13. https://github.com/NCBI-
Hackathons/EndoVir

14. https://github.com/NCBI-
Hackathons/VirusFriends

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Data Hackathons, 2019

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RNAseq – UNC, March 11-13 2019;
Palo Alto, June 2019
Smaller events at USF and Pittsburgh
Human PanGenomics – UCSC, 25-27 March 2019;
Haplotype Annotation, Baltimore, June 2019
Variant Synthetic Dataset Generation –
Boston, April 15-16, 2019
Computational Medicine Hackathon
Baltimore, June 10-11, 2019
Prokaryotic Virulence Factor Annotate-athon
NIH Campus, August 2019
Single Cell Genomics Hackathon
NYC, September 2019
Structural Variants Hackathon
Houston, October 2019

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Virus Discovery!

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25. 25
Robert Butler and Lucy Wang (+team)

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RNA-seq Indexing!

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RNA-seq Indexing!

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https://github.com/NCBI-Hackathons/RNA-Seq-in-the-Cloud

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Robert Butler and Lucy Wang (+team)

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Building a Usable Human Pangenome!

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Building a Usable Human Pangenome!

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Building a Usable Human Pangenome!

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Building a Usable Human Pangenome!

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Building a Usable Human Pangenome!

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Building a Usable Human Pangenome!

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41. @DCGenomics
Communication

42. Other People’s Hackathons

43. Creating a Community
https://biohackathons.github.io

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