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Using Arabidopsis thaliana Phenyl propan-omics Tools To Address Euphorbiaceae Wood Qualities

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Using Arabidopsis thaliana Phenyl propan-omics Tools To Address Euphorbiaceae Wood Qualities : Biswapriya Biswavas Misra, Ph.D.; 18th August, 2012

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Using Arabidopsis thaliana Phenyl propan-omics Tools To Address Euphorbiaceae Wood Qualities

  1. 1. Using Arabidopsis thalianaPhenyl propan-omics Tools ToAddress Euphorbiaceae Wood Qualities Biswapriya Biswavas Misra, Ph.D. CCB 18th August, 2012
  2. 2. Wood Characteristics in Euphorbiaceae at a GlanceRicinus communis Manihot esculenta Hevea brasiliensisStem TS Stem TS Stem TS
  3. 3. List of Core Genes Involved in Lignin Biosynthesis & Phenylpropanoid Metabolism in Plants
  4. 4. General Biosynthetic Scheme ofPhenylpropanoid Biosynthesis in PlantsSequenced Genomes & PP Biosynthesis Pathway Orthologs in Numbers
  5. 5. Overview of Plant Metabolic Pathway Sharing: Manihot esculenta [Euphorbiaceae], Arabidopsis thaliana [Brassicaceae] and Populus trichocarpa [Salicaceae]
  6. 6. Overview of Phenylpropanoid & Lignin Biosynthetic Pathway Genes [ONLY Shared Orthologs] Arabidopsis thaliana, Populus trichocarpa, Manihot esculenta & Ricinus communis
  7. 7. Mapped Proteins inPhenylpropanoid Biosynthesis for Ricinus communis
  8. 8. Mapped Proteins inPhenylpropanoid Biosynthesis for Populus trichocarpa
  9. 9. List of Core Genes Involved in Phenylpropanoid Metabolism in Arabidopsis thaliana
  10. 10. List of Core Genes Involved in Phenylpropanoid Metabolism in Arabidopsis thaliana
  11. 11. List of Core Genes Involved in Phenylpropanoid Metabolism in Manihot esculenta
  12. 12. List of Core Genes Involved in Phenylpropanoid Biosynthesis in Ricinus communis
  13. 13. List of Core Genes Involved in Phenylpropanoid Biosynthesis in Ricinus communis
  14. 14. List of Core Genes Involved in Phenylpropanoid Metabolism in Populus trichocarpa
  15. 15. Distribution of Core Genes Involved in Lignin Biosynthesis &Phenylpropanoid Metabolism on Arabidopsis thaliana Chromosomes [Model Herb !!!]
  16. 16. Gene Ontology – Cellular Compartment for Arabidopsis thaliana orthologs
  17. 17. Gene Ontology – Molecular Function for Arabidopsis thaliana orthologs
  18. 18. Gene Ontology – Biological Process for Arabidopsis thaliana orthologs
  19. 19. Gene Ontology – CellularCompartment for Arabidopsis thaliana orthologs
  20. 20. Gene Ontology – Molecular Function for Arabidopsis thaliana orthologs
  21. 21. Gene Ontology – Biological Process for Arabidopsis thaliana orthologs
  22. 22. Interaction Networks for Arabidopsis thaliana orthologs- 2 Clusters
  23. 23. Tag Clouds Based on GO Terms for Arabidopsis thaliana orthologs
  24. 24. List of GO Terms- Biological Process- Arabidopsis thaliana orthologs
  25. 25. Tree Map for GO Terms- Biological Process- Arabidopsis thaliana orthologs
  26. 26. Interactive Graph for GO Terms- Biological Process- Arabidopsis thaliana orthologs
  27. 27. Scatter Plot for GO Terms- Biological Process- Arabidopsis thaliana orthologs
  28. 28. Tree Map for GO Terms- Cellular Component Arabidopsis thaliana orthologs
  29. 29. Interactive Graph for GO Terms- Cellular Component Arabidopsis thaliana orthologs
  30. 30. Scatter Plot for GO Terms- Cellular Component Arabidopsis thaliana orthologs
  31. 31. Tree Map for GO Terms- Molecular Function Arabidopsis thaliana orthologs
  32. 32. Interactive Graph for GO Terms- Molecular Function Arabidopsis thaliana orthologs
  33. 33. Interactive Graph for GO Terms- Molecular Function Arabidopsis thaliana orthologs
  34. 34. Clustering of 4CL Functionality and Co-relation to GO Terms in Arabidopsis thaliana orthologs
  35. 35. Clustering of Entire Repertoire of Gene’s Functionality and Co-relation to GO Terms in Arabidopsis thaliana orthologs
  36. 36. Clustering of PAL Functionality and Co-relation to GO Terms in Arabidopsis thaliana orthologs
  37. 37. GO-FAT Analysis for Biological Process in Arabidopsis thaliana Orthologs
  38. 38. GO-FAT Analysis for Molecular Function in Arabidopsis thaliana Orthologs
  39. 39. GO-FAT Analysis for Cellular Component in Arabidopsis thaliana Orthologs
  40. 40. GO-SLIM Analysis for Arabidopsis thaliana Orthologs
  41. 41. GO-SLIM Analysis for Arabidopsis thaliana Orthologs
  42. 42. GO-SLIM Analysis for Arabidopsis thaliana Orthologs
  43. 43. GO-SLIM Analysis for Arabidopsis thaliana Orthologs
  44. 44. Tissue Specificity of Arabidopsis thaliana Orthologs –Evidence-Based
  45. 45. PIR-Superfamily Annotation of Arabidopsis thaliana Orthologs
  46. 46. KEGG Pathway Annotation of Arabidopsis thaliana Orthologs
  47. 47. EC Number Annotation of Arabidopsis thaliana OrthologsPanther Family Annotation of Arabidopsis thaliana Orthologs
  48. 48. SP Comment Annotation of Arabidopsis thaliana Orthologs
  49. 49. Thank YouNote: Study is based solely on Publicly available Databases, Platforms/ Softwares, Sequences, Codes, Programs and Information and are exclusively GENERATED. Appropriate sources are thanked. Follow the Ideas- as SKY is the Limit !More INTERESTING & RELEVANT ONES are on the Cards ! Happy Following!!!

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