Functional Genome: Network View Point Through Leaf & Bark

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Functional Genome:
Network View Point Through Leaf & Bark
by Biswapriya B. Misra, Ph.D., 13th August, 2012

Published in: Education, Technology
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Functional Genome: Network View Point Through Leaf & Bark

  1. 1. Functional Genome:Network View Point Through Leaf & Bark Biswapriya Biswavas Misra, Ph.D. CCB 2nd August, 2012
  2. 2. Huh ? The Functional Genome [read. LeafTranscriptome] for Maintenance is so Small ?
  3. 3. How “Glucose Metabolism” Thrives with So Many MissingElements ? Sequencing-Annotations Issues or Bio-Bypass ?
  4. 4. Similar Story with TCA Cycle ?
  5. 5. But wait, wait….Splicing Minor Pathway Inactive whileMajor Pathway is Active ! Clear demarcation of events ?
  6. 6. No MMPs [Matrix Metalloproteases] Active/ Represented ? Well-understood for a Leaf …..
  7. 7. Picture Perfect Cytosolic Triglyceride metabolism Underway ?
  8. 8. What ?? No Aquaporins…. You must be joking ! Not really….
  9. 9. Confused ? More to Trouble….Chromosome Maintenance, i.e., Telomere Extension, a more Gloomy Scenario ?
  10. 10. Polyamine Metabolism….under represented ?
  11. 11. In Bark Transcriptome, the MOST Abundant Transcripts are Perfectly Orthologous to Arabidopsis Chromosome No. 1 Genes …….
  12. 12. In Bark Transcriptome, Snapshots of enhanced ‘pyrophosphate metabolism/ biosynthesis’ is clearly evident from the following GO_BP_FAT Data…
  13. 13. In Bark Transcriptome, Snapshots of enhanced ‘gene regulatory events/ transcriptional activities’ are clearly evident from the following GO_MF_FAT Data…
  14. 14. Summary: Functional Annotation of Bark Transcriptome
  15. 15. Thank You Note: Study based solely on Publicly available Databases, Platforms/Softwares, Sequences and Information. Appropriate sources are thanked.

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