for Open Biodiversity Knowledge Management
Donat Agosti
Plazi
OpenData Week, Montpellier, July 12, 2014
Bouchout Declarati...
Biodiversity Crisis
X
New scientific tools
Hardisty, Nature 502, 171 (2013)
BUT: predictive ecology has substantial data needs
Harfoot, BIH2013, Rome, 2013
The big q...
Decentralized biodiversity infrastructure
Plants
3,400 Herbaria worldwide
10,000 Associate curators and specialists
350,00...
One collection’s view of the world
Nationaal Herbarium Nederland collection on GBIF
Source: http://www.gbif.org/dataset/7b...
200,000,000+ printed pages
1,900,000 species described
20,000,000+ species treatments
17,000 new species per year
Biodiver...
Names as information tags in life sciences
Names
Characteristics
Publications
GenesCollections
Specimens
Distribution
Coordination and Policy Development in Preparation for a
European Open Biodiversity Knowledge Management
System
Supported ...
iBiosphere
Biodiversity Knowledge Management System
Create digital objects
+ Identifiers and resolvers
+ Open Access
+ Legislation
+ Adequate infrastructure
+ Sustainable and...
Why another declaration?
free of charge online access to EU-funded research
…
essential for Europe's ability to enhance its economic
performance an...
Access to digital data sets resulting from federally funded research
….
will accelerate scientific breakthroughs and innov...
http://www.nature.com/news/2011/110511/full/news.2011.281.html
800 billion USD have been generated
by the human genome pro...
After all, there is a Budapest
Declaration, a Berlin Declaration, a
Bethesda Declaration…
… but additional messages:
Direct access to digital content
… but additional messages:
Direct access to digital content
Re-acting: The biodiversity community
is re-acting together to...
… but additional messages:
Direct access to digital content
Re-acting: The biodiversity community is
re-acting together to...
… but additional messages:
Direct access to digital content
Re-acting: The biodiversity community is
re-acting together to...
Bouchout Declaration
Bouchout Declaration
http://bouchoutdeclaration.org
Launched: June 12, 2014
Bouchout Declaration
signatories
Bouchout Declaration
(75)
(147)
Bouchout Declaration
Bouchout Declaration
But: Gestion Collaborative du Libre Accès aux
Connaissances sur la Biodiversité (Open Biodiversity
Kn...
Bouchout Declaration
Open Access
Utilisation libre et ouverte des ressources
numériques sur la biodiversité et des service...
Bouchout Declaration
Licenses
Licences ou clauses de renonciation qui accordent
ou permettent à tous les utilisateurs un d...
Bouchout Declaration
Licenses ctd.
Data and research results are not copyrighted
and thus no license should be added
If po...
Bouchout Declaration
Policy
Elaboration de politiques qui favoriseront un
accès libre et ouvert aux données sur la
biodive...
Bouchout Declaration
Attribution
Suivi de l’utilisation des identifiants dans les liens
et les citations pour garantir que...
Bouchout Declaration
Infrastructure
Mise en place d’infrastructure, normes et
protocoles communs pour améliorer l’accès au...
Bouchout Declaration
Registers
Registres de contenus et de services pour
permettre la découverte, l’accès et l’utilisation...
Bouchout Declaration
Persistent Identifiers
Identifiants permanents pour les objets de
données et les objets physiques tel...
Bouchout Declaration
Linked Open Data
Liaison des données utilisant des vocabulaires
communs, à la fois au sein et au-delà...
Bouchout Declaration
Development
Dialogue pour préciser le concept, les priorités et
les exigences techniques de la Gestio...
Bouchout Declaration
Business
Gestion durable et en Libre Accès des
Connaissances sur la Biodiversité attentive aux
aspect...
Sign now!
Et vous?
bouchout@plazi.org
bouchoutdeclaration.org
Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version
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Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

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Lecture explaining the Bouchout Declaration with principles in French

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  • Where does the data come from?
    Data comes from the institutions and legacy literature
    116,000,000 plant records
  • Collections, GBIF series
    None is complete on its own, the power is in aggretation; data highly complimentary, none complete alone, power in aggregation
  • Bouchout Declaration on Open Biodiversity Knowledge Management, Montpellier July 11, RMLL 2014, French version

    1. 1. for Open Biodiversity Knowledge Management Donat Agosti Plazi OpenData Week, Montpellier, July 12, 2014 Bouchout Declaration
    2. 2. Biodiversity Crisis X New scientific tools
    3. 3. Hardisty, Nature 502, 171 (2013) BUT: predictive ecology has substantial data needs Harfoot, BIH2013, Rome, 2013 The big question What is the future of the biological world? Imagine if we could: …Predict community level dynamics of ecosystems at scales from local to global, based on the ecology and biology of all individual organisms
    4. 4. Decentralized biodiversity infrastructure Plants 3,400 Herbaria worldwide 10,000 Associate curators and specialists 350,000,000 specimens in collections 180,000,000 specimens digitized 2,000,000,000 specimens including animals Source: gbif.org; http://sciweb.nybg.org/science2/IndexHerbariorum.asp
    5. 5. One collection’s view of the world Nationaal Herbarium Nederland collection on GBIF Source: http://www.gbif.org/dataset/7b33b040-f762-11e1-a439-00145eb45e9a
    6. 6. 200,000,000+ printed pages 1,900,000 species described 20,000,000+ species treatments 17,000 new species per year Biodiversity libraries BUT: The data are hidden Incomplete digitization Publications are not semantically enhanced Collections are incomplete Data is not linked Most data are not open
    7. 7. Names as information tags in life sciences Names Characteristics Publications GenesCollections Specimens Distribution
    8. 8. Coordination and Policy Development in Preparation for a European Open Biodiversity Knowledge Management System Supported by the European Commission through its FP7 research funding programme (pro-)iBiosphere
    9. 9. iBiosphere Biodiversity Knowledge Management System
    10. 10. Create digital objects + Identifiers and resolvers + Open Access + Legislation + Adequate infrastructure + Sustainable and permanent infrastructure + Reliable services for partners in research projects and society Seamless Global Virtual Research Knowledge Management System (European Open Biodiversity Knowledge Management System) Biodiversity Knowledge Management System
    11. 11. Why another declaration?
    12. 12. free of charge online access to EU-funded research … essential for Europe's ability to enhance its economic performance and improve the capacity to compete through knowledge http://ec.europa.eu/digital-agenda/en/open-access-scientific-information
    13. 13. Access to digital data sets resulting from federally funded research …. will accelerate scientific breakthroughs and innovation, promote entrepreneurship, and enhance economic growth and job creation. http://www.whitehouse.gov/blog/2013/02/22/expanding-public-access-results-federally-funded-research
    14. 14. http://www.nature.com/news/2011/110511/full/news.2011.281.html 800 billion USD have been generated by the human genome project
    15. 15. After all, there is a Budapest Declaration, a Berlin Declaration, a Bethesda Declaration…
    16. 16. … but additional messages: Direct access to digital content
    17. 17. … but additional messages: Direct access to digital content Re-acting: The biodiversity community is re-acting together to novel environmental, scientific and societal challenges
    18. 18. … but additional messages: Direct access to digital content Re-acting: The biodiversity community is re-acting together to novel environ- mental, scientific and societal challenges Third leg: digital content as commitment
    19. 19. … but additional messages: Direct access to digital content Re-acting: The biodiversity community is re-acting together to novel environ- mental, scientific and societal challenges Third leg: digital content as commitment Catalyst for discussions
    20. 20. Bouchout Declaration Bouchout Declaration http://bouchoutdeclaration.org
    21. 21. Launched: June 12, 2014 Bouchout Declaration
    22. 22. signatories Bouchout Declaration
    23. 23. (75) (147)
    24. 24. Bouchout Declaration
    25. 25. Bouchout Declaration But: Gestion Collaborative du Libre Accès aux Connaissances sur la Biodiversité (Open Biodiversity Knowledge Management) En tant que signataires, nous encourageons une approche globale de la Gestion Collaborative du Libre Accès aux Connaissances sur la Biodiversité, basée sur les principes fondamentaux suivants :
    26. 26. Bouchout Declaration Open Access Utilisation libre et ouverte des ressources numériques sur la biodiversité et des services d’accès associés
    27. 27. Bouchout Declaration Licenses Licences ou clauses de renonciation qui accordent ou permettent à tous les utilisateurs un droit libre, irrévocable et international de copier, utiliser, diffuser, transmettre et rendre public le travail effectué, ainsi que d’exploiter le travail réalisé et de faire des travaux dérivés, sous réserve d’une attribution conforme aux pratiques communautaires, tout en reconnaissant que les fournisseurs pourront développer des produits commerciaux avec des licences plus restrictives.
    28. 28. Bouchout Declaration Licenses ctd. Data and research results are not copyrighted and thus no license should be added If possible, publications should be created as Open Access works
    29. 29. Bouchout Declaration Policy Elaboration de politiques qui favoriseront un accès libre et ouvert aux données sur la biodiversité
    30. 30. Bouchout Declaration Attribution Suivi de l’utilisation des identifiants dans les liens et les citations pour garantir que les sources et les fournisseurs de données se voient attribuer la reconnaissance de leurs contributions
    31. 31. Bouchout Declaration Infrastructure Mise en place d’infrastructure, normes et protocoles communs pour améliorer l’accès aux données ouvertes et leur utilisation
    32. 32. Bouchout Declaration Registers Registres de contenus et de services pour permettre la découverte, l’accès et l’utilisation des données en libre accès
    33. 33. Bouchout Declaration Persistent Identifiers Identifiants permanents pour les objets de données et les objets physiques tels que les spécimens, les images et les traitements taxonomiques avec des mécanismes standard pour diriger les utilisateurs directement vers les contenus et les données
    34. 34. Bouchout Declaration Linked Open Data Liaison des données utilisant des vocabulaires communs, à la fois au sein et au-delà de la biodiversité, qui permettent la participation à une infrastructure en nuage des Données Liées en Libre Accès
    35. 35. Bouchout Declaration Development Dialogue pour préciser le concept, les priorités et les exigences techniques de la Gestion en Libre Accès des Connaissances sur la Biodiversité
    36. 36. Bouchout Declaration Business Gestion durable et en Libre Accès des Connaissances sur la Biodiversité attentive aux aspects scientifiques, sociologiques, juridiques et financiers
    37. 37. Sign now! Et vous? bouchout@plazi.org bouchoutdeclaration.org

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