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2016 Beneficial Microbes Poster-TMiyashiro-correct_size (1)


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2016 Beneficial Microbes Poster-TMiyashiro-correct_size (1)

  1. 1. Introduction The Hawaiian bobtail squid harbors populations of Vibrio fischeri within a dedicated structure called the light organ (Fig. 1). Previous work has shown that the V. fischeri infections within wild-caught squid are polyclonal, i.e., each animal hosts multiple strains of V. fischeri (1). The assembly process and biological function of such polyclonal infections in the squid-Vibrio symbiosis remain unclear, particularly because the symbiotic strains currently available underrepresent the phenotypic and genetic diversity. We recently reported experiments that enable undergraduate researchers to study natural V. fischeri isolates (2) Methods Media and growth conditions In this study, V. fischeri strains were grown at 28°C in LBS medium (1% tryptone, 0.5% yeast extract, 2% NaCl, 50 mM Tris-HCl [pH 7.5]). Bioluminescence assay Luminescence was measured for cultures grown in LBS ± 120 nM 3-oxo-C6 HSL. Motility assay 10-μl sample of culture at OD600 ~0.2 was injected into 0.25% agar plates with TB-IO medium at 28°C. Diameter of motility ring was measured over time. Sequencing The luxIR intergenic region was amplified by PCR and cloned into pCR-blunt. Sanger sequencing was performed by PSU sequencing core facility. Alignment was performed using MEGA 6 software. Phylogenetic analysis PCR amplification and analysis was performed as previously described (2). Squid colonization Newly hatched squid were exposed to ~5,000 CFU/ml inoculum for 18 h. At 48 h post-inoculation (p.i.), animal luminescence was measured. Figure 1 The squid-Vibrio symbiosis. A. Juvenile squid. Dotted box highlights light organ. Bar = 1 mm. B. Juvenile light organ colonized by GFP-labeled V. fischeri (green). Bar = 100 µm. C. Crypt highlighted in B showing V. fischeri population. Host actin is stained with phalloidin (blue). Bar = 10 µm. A B C Goal: To implement inquiry-based modules for undergraduates to examine V. fischeri symbiont diversity within a semester. Results Each semester-long study involved four undergraduate students isolating strains directly from the light organ of a wild-caught E. scolopes adult animal. For each strain, the bioluminescence response to 120 nM 3-oxo-C6 HSL, which induces bioluminescence in ES114, and the motility rate through soft-agar were determined (Fig. 2). The bioluminescence response of ES114 was remarkably consistent across trials, showing approximately 100-fold enhanced luminescence levels (Fig. 2B). In contrast, variability was observed for motility rates (Fig. 2D), which may be due to different motility-plate preparations among individuals. Together, these assays demonstrate striking phenotypic diversity among the strains isolated from individual animals, as previously reported (1). Figure 2 Bioluminescence and motility of natural isolates. A. Bioluminescence assay performed for one isolate, with positive and negative controls for V. fischeri response to 3-oxo-C6 HSL. B. Bioluminescence assay for ES114 by different students. C. Bioluminescence response of natural isolates to 3-oxo-C6 HSL. D. Motility rates of ES114 performed by different students. E. Motility rates of natural isolates (normalized by rate of ES114). F. Scatter plot showing bioluminescence (C) and motility rates (E) for natural isolates. Colors indicate strains co-isolated from the same animal. ES114 is represented black circle. Finally, we examined the ability of V. fischeri strains to colonize the light organ of juvenile squid, which hatch un- colonized. Based on animal luminescence, all strains were able to function in symbiosis, although the efficiency of colonization varied among the strains (Fig. 5). Based on CFU plating, co-colonization assays showed strains CHS319, ECT001, NAD004, ABM004, and EMG003 were out-competed by ES114 and strain ZJH004 competed equally with ES114 (data not shown). Sequencing of the luxIR intergenic region, which is hypervariable among V. fischeri strains (3), revealed variation among the isolates (Fig. 3), which suggest a genetic basis for the different luminescence responses observed among the strains. Figure 3 Alignment of luxIR intergenic region among natural isolates. Strain names are labeled according to isolated animal. Known binding sites for transcription factor are indicated. Phylogenetic analysis was performed using four genetic loci (recA, mdh, katA, and pyrC). Each undergraduate group isolated between 2-3 genetically distinct strains (Fig. 4). Figure 5 Squid colonization assay. A. Colonization assay for one natural isolate, with positive (ES114) and negative (apo-symbiotic) controls for animal luminescence. Lum+ animals are defined as animals with > 500 RLU at 48 h p.i. B. Colonization efficiency for natural isolates as determined by luminescence. Conclusions These results demonstrate that an inquiry-based approach is sufficient to isolate and characterize natural V. fischeri symbionts with phenotypic and genetic diversity. Furthermore, our studies suggest that the bioluminescence/ motility profile of the type strain ES114 is unique relative to those of other isolates obtained thus far. References 1. Wollenberg, M.S. and Ruby, E.G. (2009) Population structure of Vibrio fischeri within the light organs of Euprymna scolopes squid from Two Oahu (Hawaii) populations. Appl Environ Microbiol 75: 193-202. 2. Sun, Y., LaSota, E.D., Cecere, A.G., LaPenna, K.B., Larios-Valencia, J., Wollenberg, M.S. and Miyashiro, T. (2016) Intraspecific Competition Impacts Vibrio fischeri Strain Diversity during Initial Colonization of the Squid Light Organ. Appl Environ Microbiol 82: 3082-91. 3. Bose, J.L., Wollenberg, M.S., Colton, D.M., Mandel, M.J., Septer, A.N., Dunn, A.K. and Stabb, E.V. (2011) Contribution of rapid evolution of the luxR-luxI intergenic region to the diverse bioluminescence outputs of Vibrio fischeri strains isolated from different environments. Appl Environ Microbiol 77: 2445-57. 4. Wollenberg, M.S. and Ruby, E.G. (2012) Phylogeny and fitness of Vibrio fischeri from the light organs of Euprymna scolopes in two Oahu, Hawaii populations. ISME J 6: 352-62. Acknowledgements We thank members of the Miyashiro lab for valuable advice during this study. This work was supported by the Eberly College of Science. For further information Please e-mail Tim Miyashiro at Future directions 1. This inquiry-based approach will be used as a training program for undergraduate researchers who join the lab. Following completion of this program, students will propose independent projects to pursue in the lab. 2. To what extent do co-occurring strains segregate within the light organ? 3. How do different strains interact via quorum signaling? 4. What strain types are transmissible? Figure 4 Phylogenetic analysis was performed with concatenated sequences of recA, mdh, katA, and pyrC. Names of strains isolated for this study are colored according animal. Strains in stippled box are competitively dominant strains (4) Development of an inquiry-based approach to investigate strain diversity within the squid-Vibrio symbiosis A. G. Cecere1, E. Grandinette1, Z. J. Houston1, A. Mouchref1, A. N. Murtha1, N. C. Ortega1, E. B. Schwendeman1, C. H. Steingard1, E. C. Tatsumi1, M. S. Wollenberg2, and Tim Miyashiro1 1Department of Biochemistry and Molecular Microbiology, The Pennsylvania State University, University Park, PA 2Department of Biology, Kalamazoo College, Kalamazoo, MI