2 - Systematic Literature Reviews: tools

Vittorio Scarano
Vittorio ScaranoFull Professor at Università degli Studi Salerno
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2 - Systematic literature reviews:
Bibliographic Tools
Vittorio Scarano
Dipartimento di Informatica, Universit`a di Salerno (Italy)
vitsca@unisa.it
PhD in Computer Science,
University of Salerno (Italy)
January 14th, 2020
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LESSON PLAN
1 LaTeX and BibTeX
2 Sources of information
3 Tools for Bibliographies
4 Tools for Systematic Literature Reviews
5 Conclusions and comments
2 - Systematic Literature Reviews: tools
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MAP
1 LaTeX and BibTeX
2 Sources of information
3 Tools for Bibliographies
4 Tools for Systematic Literature Reviews
5 Conclusions and comments
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LATEX
• LaTeX was originally written in the early 1980s by Leslie Lamport at
SRI International
• LaTeX is a document preparation system: it uses plain text as opposed
to the WYSIWYG (”what you see is what you get”)
• Markup tagging conventions to define the general structure of a
document
• Distributions such as TeX Live or MikTeX are used to produce an
output file (such as PDF or DVI) suitable for printing or digital
distribution.
• LaTeX is widely used in academia for the communication and
publication of scientific documents in many fields
• LaTeX can be used as a standalone document preparation system, or
as an intermediate format: sometimes is part of a pipeline for
translating from other formats (XML-based formats) to PDF
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BIBTEX
• Reference management software for formatting lists of references.
• Used together with the LaTeX document preparation system.
• Facilitate the citation of sources in a consistent manner, by separating
bibliographic information from the presentation of this information,
• similarly to the separation of content and presentation/style supported
by LaTeX
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FILES INVOLVED
• BibTeX chooses from the .bib file(s) only those entries specified by the
.aux file (that is, those given by LaTeX’s cite or nocite
commands),
• It then creates as output a .bbl file containing these entries together
with the formatting commands specified by the .bst file.
• LaTeX will use the .bbl file (possibly edited) to produce the reference
list.
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BIBTEX ENTRY
2 - Systematic Literature Reviews: tools
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MAP
1 LaTeX and BibTeX
2 Sources of information
3 Tools for Bibliographies
4 Tools for Systematic Literature Reviews
5 Conclusions and comments
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MAIN INFORMATION SOURCES IN COMPUTER SCIENCE
• ACM digital library dl.acm.org
• IEEE Xplore,
• ISI web of knowledge,
• ScienceDirect,
• CiteSeer,
• SpringerLink
• DBLP
• Wiley Inter Science
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SEARCHING ACM DIGITAL LIBRARY - 1
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SEARCHING ACM DIGITAL LIBRARY - 2
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SEARCHING ACM DIGITAL LIBRARY - 3
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SEARCHING ACM DIGITAL LIBRARY - 4
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SEARCHING ACM DIGITAL LIBRARY - 5
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SEARCHING ACM DIGITAL LIBRARY - 6
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SEARCHING ACM DIGITAL LIBRARY - 7
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SEARCHING ACM DIGITAL LIBRARY - 8
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SEARCHING ACM DIGITAL LIBRARY - 9
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SEARCHING ACM DIGITAL LIBRARY - 10
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SEARCHING ACM DIGITAL LIBRARY - 11
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SEARCHING ACM DIGITAL LIBRARY - 12
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SEARCHING ACM DIGITAL LIBRARY - 13
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MAP
1 LaTeX and BibTeX
2 Sources of information
3 Tools for Bibliographies
4 Tools for Systematic Literature Reviews
5 Conclusions and comments
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MANY TOOLS AVAILABLE FOR BIBTEX/LATEX
• Jabref
• Zotero
• Mendeley
• Endnote
• . . .
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JABREF
• JabRef is a reference management software that uses BibTeX and
BibLaTeX as its native formats and is therefore typically used for
LaTeX.
• The original version of JabRef was released on November 29, 2003.
• It provides an interface for editing BibTeX files, for importing data
from online scientific databases, and for managing and searching
BibTeX files.
• Released under the terms of MIT license since version 3.6 (and was
under the GPL license before).
• Cross-platform
• www.jabref.org
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JABREF FEATURES
• Search the Web: arXiv, CiteseerX, Google Scholar, Medline, GVK,
IEEEXplore, ACM DL and Springer and others
• Import formats: RIS, Medline/Pubmed (xml), Refer/Endnote, INSPEC,
BibTeXML, CSA, ISI Web of Science, SilverPlatter, Scifinder, OVID,
Biblioscape, Sixpack, JStor, and RIS.
• Export formats: HTML, Docbook, BibTeXML, MODS, RTF, Refer/Endnote,
and OpenOffice.org as well as LibreOffice
• Automatic download of full texts: search for the full text of a reference,
download it, and directly link it to the BibTeX entry.
• Search the bibliography by a pattern
• Classification of entries: group entries explicitly, by keywords or any other
fields, and also rank them
• Integrates to your environment: PDF viewers, web browser
• Insert citations into TeXstudio, LyX, Kile, Emacs, TeXmaker, Vim, and
WinEdt
• Automatic Key generation
• Support for XMP Metadata in PDFs
• Customization of BibTeX fields
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JABREF - 1
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JABREF - 2
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JABREF - 3
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JABREF - 4
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JABREF - 5
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JABREF - 6
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JABREF - 7
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JABREF - 8
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JABREF - 9
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JABREF - 10
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JABREF - 11
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ZOTERO
• Jabref works on local files: useful for several different bibliographies
• Some glitches, but constantly improving
• Zotero www.zotero.org is an alternative: besides local version, it is
also web-based
• Zotero allows
• organization in collections
• tagging
• Rich annotation system, with files attached
• Zotero connectors with Chrome, Firefox, Safari
• Easy add wizard by using Digital Object Identifier (doi)
• Also integrated in Word and Libreoffice
• Collaboration with other users
• Freemium model: up to 300Mb shared for free, 2Gb for 20$/year, 6GB
for 60$/year, unlimited for $120/year
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ZOTERO
2 - Systematic Literature Reviews: tools
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MAP
1 LaTeX and BibTeX
2 Sources of information
3 Tools for Bibliographies
4 Tools for Systematic Literature Reviews
5 Conclusions and comments
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SLR-TOOLKIT
• Many tools
• “Supporting Systematic Literature Reviews in Computer Science The
Systematic Literature Review Toolkit” by Sebastian G¨otz (2018)
• Manages bibtex collections and allow to build a taxonomy
• Classification of entries with the taxonomy
• Automatic creation of charts (bar, bubble, pie)
• Import from Google Scholar and others
• Support and synch with Mendeley
• Open source on Github at
github.com/sebastiangoetz/slr-toolkit
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SLR-TOOLKIT 1
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SLR-TOOLKIT 2
Video at https://youtu.be/IB4d9CJt144
2 - Systematic Literature Reviews: tools
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MAP
1 LaTeX and BibTeX
2 Sources of information
3 Tools for Bibliographies
4 Tools for Systematic Literature Reviews
5 Conclusions and comments
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PERSONAL CONSIDERATIONS
• Important to follow a process when documenting literature surveys
• Useful tools and instruments can facilitate the effort: learn to use it as
a hammer for a carpenter
• Activity on building intelligent tools for SLR (see the bibliographic
notes for more info)
2 - Systematic Literature Reviews: tools
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READING MATERIAL AND CREDITS
• Material and references available at www.isislab.it under “Research”
• Slides are available on Slideshare under Open licence Common
Creative - Attribution 4.0 International (CC BY 4.0)
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QUESTIONS? COMMENTS? ANYTHING?
2 - Systematic Literature Reviews: tools
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2 - Systematic Literature Reviews: tools