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2 - Systematic Literature Reviews: tools

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For the second of the two seminars on Systematic Literature Review, here the tools useful for SLR are presented. The seminar is meant for PhD students and was given at the Computer Science PhD Program at the University of Salerno, Italy

For the second of the two seminars on Systematic Literature Review, here the tools useful for SLR are presented. The seminar is meant for PhD students and was given at the Computer Science PhD Program at the University of Salerno, Italy

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2 - Systematic Literature Reviews: tools

  1. 1. BibTeX Sources Bibliography SLR tools Conclusions 1 / 54 2 - Systematic literature reviews: Bibliographic Tools Vittorio Scarano Dipartimento di Informatica, Universit`a di Salerno (Italy) vitsca@unisa.it PhD in Computer Science, University of Salerno (Italy) January 14th, 2020
  2. 2. BibTeX Sources Bibliography SLR tools Conclusions 2 / 54 LESSON PLAN 1 LaTeX and BibTeX 2 Sources of information 3 Tools for Bibliographies 4 Tools for Systematic Literature Reviews 5 Conclusions and comments
  3. 3. BibTeX Sources Bibliography SLR tools Conclusions 4 / 54 MAP 1 LaTeX and BibTeX 2 Sources of information 3 Tools for Bibliographies 4 Tools for Systematic Literature Reviews 5 Conclusions and comments
  4. 4. BibTeX Sources Bibliography SLR tools Conclusions 5 / 54 LATEX • LaTeX was originally written in the early 1980s by Leslie Lamport at SRI International • LaTeX is a document preparation system: it uses plain text as opposed to the WYSIWYG (”what you see is what you get”) • Markup tagging conventions to define the general structure of a document • Distributions such as TeX Live or MikTeX are used to produce an output file (such as PDF or DVI) suitable for printing or digital distribution. • LaTeX is widely used in academia for the communication and publication of scientific documents in many fields • LaTeX can be used as a standalone document preparation system, or as an intermediate format: sometimes is part of a pipeline for translating from other formats (XML-based formats) to PDF
  5. 5. BibTeX Sources Bibliography SLR tools Conclusions 6 / 54 BIBTEX • Reference management software for formatting lists of references. • Used together with the LaTeX document preparation system. • Facilitate the citation of sources in a consistent manner, by separating bibliographic information from the presentation of this information, • similarly to the separation of content and presentation/style supported by LaTeX
  6. 6. BibTeX Sources Bibliography SLR tools Conclusions 7 / 54 FILES INVOLVED • BibTeX chooses from the .bib file(s) only those entries specified by the .aux file (that is, those given by LaTeX’s cite or nocite commands), • It then creates as output a .bbl file containing these entries together with the formatting commands specified by the .bst file. • LaTeX will use the .bbl file (possibly edited) to produce the reference list.
  7. 7. BibTeX Sources Bibliography SLR tools Conclusions 8 / 54 BIBTEX ENTRY
  8. 8. BibTeX Sources Bibliography SLR tools Conclusions 10 / 54 MAP 1 LaTeX and BibTeX 2 Sources of information 3 Tools for Bibliographies 4 Tools for Systematic Literature Reviews 5 Conclusions and comments
  9. 9. BibTeX Sources Bibliography SLR tools Conclusions 11 / 54 MAIN INFORMATION SOURCES IN COMPUTER SCIENCE • ACM digital library dl.acm.org • IEEE Xplore, • ISI web of knowledge, • ScienceDirect, • CiteSeer, • SpringerLink • DBLP • Wiley Inter Science
  10. 10. BibTeX Sources Bibliography SLR tools Conclusions 12 / 54 SEARCHING ACM DIGITAL LIBRARY - 1
  11. 11. BibTeX Sources Bibliography SLR tools Conclusions 13 / 54 SEARCHING ACM DIGITAL LIBRARY - 2
  12. 12. BibTeX Sources Bibliography SLR tools Conclusions 14 / 54 SEARCHING ACM DIGITAL LIBRARY - 3
  13. 13. BibTeX Sources Bibliography SLR tools Conclusions 15 / 54 SEARCHING ACM DIGITAL LIBRARY - 4
  14. 14. BibTeX Sources Bibliography SLR tools Conclusions 16 / 54 SEARCHING ACM DIGITAL LIBRARY - 5
  15. 15. BibTeX Sources Bibliography SLR tools Conclusions 17 / 54 SEARCHING ACM DIGITAL LIBRARY - 6
  16. 16. BibTeX Sources Bibliography SLR tools Conclusions 18 / 54 SEARCHING ACM DIGITAL LIBRARY - 7
  17. 17. BibTeX Sources Bibliography SLR tools Conclusions 19 / 54 SEARCHING ACM DIGITAL LIBRARY - 8
  18. 18. BibTeX Sources Bibliography SLR tools Conclusions 20 / 54 SEARCHING ACM DIGITAL LIBRARY - 9
  19. 19. BibTeX Sources Bibliography SLR tools Conclusions 21 / 54 SEARCHING ACM DIGITAL LIBRARY - 10
  20. 20. BibTeX Sources Bibliography SLR tools Conclusions 22 / 54 SEARCHING ACM DIGITAL LIBRARY - 11
  21. 21. BibTeX Sources Bibliography SLR tools Conclusions 23 / 54 SEARCHING ACM DIGITAL LIBRARY - 12
  22. 22. BibTeX Sources Bibliography SLR tools Conclusions 24 / 54 SEARCHING ACM DIGITAL LIBRARY - 13
  23. 23. BibTeX Sources Bibliography SLR tools Conclusions 26 / 54 MAP 1 LaTeX and BibTeX 2 Sources of information 3 Tools for Bibliographies 4 Tools for Systematic Literature Reviews 5 Conclusions and comments
  24. 24. BibTeX Sources Bibliography SLR tools Conclusions 27 / 54 MANY TOOLS AVAILABLE FOR BIBTEX/LATEX • Jabref • Zotero • Mendeley • Endnote • . . .
  25. 25. BibTeX Sources Bibliography SLR tools Conclusions 28 / 54 JABREF • JabRef is a reference management software that uses BibTeX and BibLaTeX as its native formats and is therefore typically used for LaTeX. • The original version of JabRef was released on November 29, 2003. • It provides an interface for editing BibTeX files, for importing data from online scientific databases, and for managing and searching BibTeX files. • Released under the terms of MIT license since version 3.6 (and was under the GPL license before). • Cross-platform • www.jabref.org
  26. 26. BibTeX Sources Bibliography SLR tools Conclusions 29 / 54 JABREF FEATURES • Search the Web: arXiv, CiteseerX, Google Scholar, Medline, GVK, IEEEXplore, ACM DL and Springer and others • Import formats: RIS, Medline/Pubmed (xml), Refer/Endnote, INSPEC, BibTeXML, CSA, ISI Web of Science, SilverPlatter, Scifinder, OVID, Biblioscape, Sixpack, JStor, and RIS. • Export formats: HTML, Docbook, BibTeXML, MODS, RTF, Refer/Endnote, and OpenOffice.org as well as LibreOffice • Automatic download of full texts: search for the full text of a reference, download it, and directly link it to the BibTeX entry. • Search the bibliography by a pattern • Classification of entries: group entries explicitly, by keywords or any other fields, and also rank them • Integrates to your environment: PDF viewers, web browser • Insert citations into TeXstudio, LyX, Kile, Emacs, TeXmaker, Vim, and WinEdt • Automatic Key generation • Support for XMP Metadata in PDFs • Customization of BibTeX fields
  27. 27. BibTeX Sources Bibliography SLR tools Conclusions 30 / 54 JABREF - 1
  28. 28. BibTeX Sources Bibliography SLR tools Conclusions 31 / 54 JABREF - 2
  29. 29. BibTeX Sources Bibliography SLR tools Conclusions 32 / 54 JABREF - 3
  30. 30. BibTeX Sources Bibliography SLR tools Conclusions 33 / 54 JABREF - 4
  31. 31. BibTeX Sources Bibliography SLR tools Conclusions 34 / 54 JABREF - 5
  32. 32. BibTeX Sources Bibliography SLR tools Conclusions 35 / 54 JABREF - 6
  33. 33. BibTeX Sources Bibliography SLR tools Conclusions 36 / 54 JABREF - 7
  34. 34. BibTeX Sources Bibliography SLR tools Conclusions 37 / 54 JABREF - 8
  35. 35. BibTeX Sources Bibliography SLR tools Conclusions 38 / 54 JABREF - 9
  36. 36. BibTeX Sources Bibliography SLR tools Conclusions 39 / 54 JABREF - 10
  37. 37. BibTeX Sources Bibliography SLR tools Conclusions 40 / 54 JABREF - 11
  38. 38. BibTeX Sources Bibliography SLR tools Conclusions 41 / 54 ZOTERO • Jabref works on local files: useful for several different bibliographies • Some glitches, but constantly improving • Zotero www.zotero.org is an alternative: besides local version, it is also web-based • Zotero allows • organization in collections • tagging • Rich annotation system, with files attached • Zotero connectors with Chrome, Firefox, Safari • Easy add wizard by using Digital Object Identifier (doi) • Also integrated in Word and Libreoffice • Collaboration with other users • Freemium model: up to 300Mb shared for free, 2Gb for 20$/year, 6GB for 60$/year, unlimited for $120/year
  39. 39. BibTeX Sources Bibliography SLR tools Conclusions 42 / 54 ZOTERO
  40. 40. BibTeX Sources Bibliography SLR tools Conclusions 44 / 54 MAP 1 LaTeX and BibTeX 2 Sources of information 3 Tools for Bibliographies 4 Tools for Systematic Literature Reviews 5 Conclusions and comments
  41. 41. BibTeX Sources Bibliography SLR tools Conclusions 45 / 54 SLR-TOOLKIT • Many tools • “Supporting Systematic Literature Reviews in Computer Science The Systematic Literature Review Toolkit” by Sebastian G¨otz (2018) • Manages bibtex collections and allow to build a taxonomy • Classification of entries with the taxonomy • Automatic creation of charts (bar, bubble, pie) • Import from Google Scholar and others • Support and synch with Mendeley • Open source on Github at github.com/sebastiangoetz/slr-toolkit
  42. 42. BibTeX Sources Bibliography SLR tools Conclusions 46 / 54 SLR-TOOLKIT 1
  43. 43. BibTeX Sources Bibliography SLR tools Conclusions 47 / 54 SLR-TOOLKIT 2 Video at https://youtu.be/IB4d9CJt144
  44. 44. BibTeX Sources Bibliography SLR tools Conclusions 49 / 54 MAP 1 LaTeX and BibTeX 2 Sources of information 3 Tools for Bibliographies 4 Tools for Systematic Literature Reviews 5 Conclusions and comments
  45. 45. BibTeX Sources Bibliography SLR tools Conclusions 50 / 54 PERSONAL CONSIDERATIONS • Important to follow a process when documenting literature surveys • Useful tools and instruments can facilitate the effort: learn to use it as a hammer for a carpenter • Activity on building intelligent tools for SLR (see the bibliographic notes for more info)
  46. 46. BibTeX Sources Bibliography SLR tools Conclusions 52 / 54 READING MATERIAL AND CREDITS • Material and references available at www.isislab.it under “Research” • Slides are available on Slideshare under Open licence Common Creative - Attribution 4.0 International (CC BY 4.0)
  47. 47. BibTeX Sources Bibliography SLR tools Conclusions 53 / 54 QUESTIONS? COMMENTS? ANYTHING?

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