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FAIR data resources:
examples from the life sciences
Susanna-Assunta Sansone
ORCiD: 0000-0001-5306-5690 | Twitter: @SusannaASansone
datareadiness.eng.ox.ac.uk
Associate Professor, Information Engineering
Associate Director, Oxford e-Research Centre
FAIRification put into practice: Characterization of energy data and development of workflows, 6 July 2021
Slides: https://www.slideshare.net/SusannaSansone
• Globally unique, resolvable, and persistent identifiers
▪ To retrieve and connect data
• Community defined descriptive metadata
▪ To enhance discoverability
• Common terminologies
▪ To use the same term mean the same thing
• Detailed provenance
▪ To contextualize the data and facilitate reproducibility
• Terms of access
▪ Open as possible, closed as necessary
• Terms of use
▪ Clear licences, ideally to enable innovation and reuse
Findable
Accessible
Interoperable
Reusable
doi.org/10.2777/1524
FAIR Principles in a nutshell
Findable
Accessible
Interoperable
Reusable
Providing for a continuum of features,
attributes and behaviours
FAIR Principles are aspirational
Define Implement Embed & Sustain
Concepts for FAIR
implementation
FAIR
culture
FAIR
ecosystem
Skills for
FAIR
Incentives and
metrics for FAIR
data and services
Investment in
FAIR
Economic Technical Social Political
doi.org/10.2777/1524
Making FAIR a reality in the research ecosystem
Findable
Accessible
Interoperable
Reusable
Developing a FAIR services framework in ELIXIR
Credit to ELIXIR Interoperability
Platform and Carole Goble
DATA & METADATA STANDARDS
REPOSITORIES
databases and
knowledgebases
DATA POLICIES
by funders, journals and
other organizations
Provides curated, community-vetted
descriptions and knowledge graphs that
represent these resources and their inter-relationships
FAIRsharing: for standards, databases and policies
Guides consumers to discover, select and use these
resources with confidence
Helps producers to make their resources more visible,
more widely adopted and cited
FAIRsharing: working with and for all stakeholders
FAIRsharing: three examples of use
A flagship output of and a WG in:
Recommended by funders,e.g.:
fairsharing.org/communities
FAIRsharing: for all disciplines, join the community!
(Educational component of FAIRsharing, work in progress!)
Examples:
A growing number of metrics, indicators,
certifications of FAIRness
Diversity of methods and opinions:
• Metrics and indicators
• Automated and manual
What is it?
An online, ‘live’ resource
for the life sciences
A collection of recipes
that cover the operation
steps of FAIR data
management
Who is it for?
Who developed it?
Researchers and data
managers professionals
in the life sciences, from
academia and industry
Including ELIXIR
members
fairplus-cookbook@elixir-europe.org
https://fairplus.github.io/the-fair-cookbook
FAIR Cookbook: overview
• Biopharma R&D productivity can be improved
by implementing the FAIR Principles
• FAIR enables powerful new AI analytics to
access data for machine learning and prediction
Ø Requirements
§ financial, technical, training
Ø Challenges
§ change the culture, show business value,
achieve the ‘FAIR enough’ on an enterprise scale
FAIR in pharmas R&D
FAIR, as enable for the digital transformation
Learn how to improve the FAIRness with exemplar datasets
Understand the levels and indicators of FAIRness
Discover open source technologies, tools and services
Find out the required skills
Acknowledge the challenges
FAIR Cookbook: learning objectives
fairplus-cookbook@elixir-europe.org
https://fairplus.github.io/the-fair-cookbook
fairplus-cookbook@elixir-europe.org
https://fairplus.github.io/the-fair-cookbook
Recipes that cover all aspects of FAIRness
https://doi.org/10.1038/s41597-019-0286-0
fairplus-cookbook@elixir-europe.org
https://fairplus.github.io/the-fair-cookbook
Applied examples: these are key!
elixir-europe.org/events/fairplus-webinar-discovering-fair-cookbook
Watch the webinar for
more information
+50 life sciences professionals, researchers and data managers
FARIplus
partners
Industry
+
Academia
ELIXIR
Nodes
represented
FAIR Cookbook: creators and contributors
fairplus-cookbook@elixir-europe.org
https://fairplus.github.io/the-fair-cookbook
FAIRification is a team sport...
...it takes a village…
…but it is no longer optional!

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FAIR resources, selected examples from ELIXIR-related projects

  • 1. FAIR data resources: examples from the life sciences Susanna-Assunta Sansone ORCiD: 0000-0001-5306-5690 | Twitter: @SusannaASansone datareadiness.eng.ox.ac.uk Associate Professor, Information Engineering Associate Director, Oxford e-Research Centre FAIRification put into practice: Characterization of energy data and development of workflows, 6 July 2021 Slides: https://www.slideshare.net/SusannaSansone
  • 2. • Globally unique, resolvable, and persistent identifiers ▪ To retrieve and connect data • Community defined descriptive metadata ▪ To enhance discoverability • Common terminologies ▪ To use the same term mean the same thing • Detailed provenance ▪ To contextualize the data and facilitate reproducibility • Terms of access ▪ Open as possible, closed as necessary • Terms of use ▪ Clear licences, ideally to enable innovation and reuse Findable Accessible Interoperable Reusable doi.org/10.2777/1524 FAIR Principles in a nutshell
  • 3. Findable Accessible Interoperable Reusable Providing for a continuum of features, attributes and behaviours FAIR Principles are aspirational
  • 4. Define Implement Embed & Sustain Concepts for FAIR implementation FAIR culture FAIR ecosystem Skills for FAIR Incentives and metrics for FAIR data and services Investment in FAIR Economic Technical Social Political doi.org/10.2777/1524 Making FAIR a reality in the research ecosystem Findable Accessible Interoperable Reusable
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  • 6. Developing a FAIR services framework in ELIXIR Credit to ELIXIR Interoperability Platform and Carole Goble
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  • 8. DATA & METADATA STANDARDS REPOSITORIES databases and knowledgebases DATA POLICIES by funders, journals and other organizations Provides curated, community-vetted descriptions and knowledge graphs that represent these resources and their inter-relationships FAIRsharing: for standards, databases and policies
  • 9. Guides consumers to discover, select and use these resources with confidence Helps producers to make their resources more visible, more widely adopted and cited FAIRsharing: working with and for all stakeholders
  • 11. A flagship output of and a WG in: Recommended by funders,e.g.: fairsharing.org/communities FAIRsharing: for all disciplines, join the community!
  • 12. (Educational component of FAIRsharing, work in progress!)
  • 13. Examples: A growing number of metrics, indicators, certifications of FAIRness Diversity of methods and opinions: • Metrics and indicators • Automated and manual
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  • 15. What is it? An online, ‘live’ resource for the life sciences A collection of recipes that cover the operation steps of FAIR data management Who is it for? Who developed it? Researchers and data managers professionals in the life sciences, from academia and industry Including ELIXIR members fairplus-cookbook@elixir-europe.org https://fairplus.github.io/the-fair-cookbook FAIR Cookbook: overview
  • 16. • Biopharma R&D productivity can be improved by implementing the FAIR Principles • FAIR enables powerful new AI analytics to access data for machine learning and prediction Ø Requirements § financial, technical, training Ø Challenges § change the culture, show business value, achieve the ‘FAIR enough’ on an enterprise scale FAIR in pharmas R&D FAIR, as enable for the digital transformation
  • 17. Learn how to improve the FAIRness with exemplar datasets Understand the levels and indicators of FAIRness Discover open source technologies, tools and services Find out the required skills Acknowledge the challenges FAIR Cookbook: learning objectives fairplus-cookbook@elixir-europe.org https://fairplus.github.io/the-fair-cookbook
  • 21. +50 life sciences professionals, researchers and data managers FARIplus partners Industry + Academia ELIXIR Nodes represented FAIR Cookbook: creators and contributors fairplus-cookbook@elixir-europe.org https://fairplus.github.io/the-fair-cookbook
  • 22. FAIRification is a team sport... ...it takes a village… …but it is no longer optional!