Genetics 101

Susan Schoenian
Susan SchoenianSheep & Goat Specialist
2013 Winter Webinar Series: Breeding Better Sheep & Goats



           Genetics 101

            SUSAN SCHOENIAN
          Sheep & Goat Specialist
      University of Maryland Extension
sschoen@umd.edu - www.sheepandgoat.com
DNA, chromosomes,
 genes, and alleles
DNA (deoxyribonucleic acid)
• The genetic material that
  controls how an animal
  looks and performs.

• Exists as two long strands
  spiraled into a double
  helix.

• Is organized into
  chromosomes.
Chromosomes
• Found in pairs in the
  nucleus of every cell
  of the body.

• There are two kinds
  of chromosomes.
   1. Autosomes
   2. Sex chromosomes
Species differ in the number of
  chromosomes they have.



                       n=60
      n=54             30 pairs
      27 pairs
AUTOSOMES                     SEX CHROMOSOMES
• Comprise all but one pair   • Every animal has one pair
  of chromosomes.               of sex chromosomes.
• (Mostly) control features   • There are two types of sex
  the same in male and          chromosomes denoted by
  females.
                                the letters X and Y.
                              • Females have two of the
                                same kind of sex
                                chromosomes (XX).
                              • Males have two distinct sex
                                chromosomes (XY).
Sex determination
           • The sex of the
             offspring is
             determined by the
             sex chromosomes.
           • Males contribute
             either an X or Y
             chromosome, thus
             determine the sex
             of the offspring.
           • Diet may also affect
             sex ratio.
Genes
   • A unit of inheritance
     composed of a segment
     of DNA.
   • Also in pairs.
   • Encodes the amino acid
     sequence of a protein.
   • Physical location of
     gene on DNA molecule
     is called a locus (loci).
Alleles (usually denoted by letters)
                   • An alternative form of a
                     gene (one of the pair)
                     that is located at a
                     specific position of a
                     specific chromosome.
                   • Organisms have two
                     alleles for each trait or
                     the expression of a trait
                     may be affected by
                     multiple alleles.
HOMOZYGOUS                   HETEROZYGOUS
• When the two alleles are   • When the two alleles are
  the same.                    different.
RECESSIVE (lower case letter)
                                 • Allele that causes a
DOMINANT (Capital letter)          phenotypic trait that is only
• One allele masks the             seen in the homozygous
  expression of another allele     genotype.
  at the same loci.
• Overrides the traits of a              A           a
  recessive allele in a
  heterozygous pairing.                   AA
                                 A                     Aa




                                 a        Aa         aa
Dominant traits in sheep and goats
 • Hairy fleece
 • Red, tan hair sheep
 • White wool
   (most breeds)
 • White goats
 • Red Boers
 • Polled
 • Brown eyes
 • Wattles
Recessive traits in sheep and goats
                  • Woolly fleece
                  • Colored fleece
                    (most breeds)
                  • Horns
                  • Blue eyes
                  • Myotonia
                  • Colored goats
                  • Black Boers
                  • Genetic defects
                     – Spider lamb disease
                     – Cryptorchidism
                     – Entropion
Incomplete or partial dominance

• When the dominant
  allele is only partially
  dominant.
• Example: scurs
Sex-limited inheritance
• Sex-linked - on X or Y
  chromosome
  Example: hemophilia

• Sex-limited - all or none
  expressed by sex
  Example: milk production

• Sex-influenced - genotype
  + sex determines
  phenotype
  Examples: horns in most
  sheep and beards in goats.
Epistasis
• When the action of one
  gene depends upon
  another.

  Example: fleece color, skin
  color, coat color

• Inheritance of fleece and
  coat color can be
  complicated and varies by
  breed.
Genetic linkages or co-inheritance
                 • Traits that tend to be
                   inherited together as a
                   consequence of an
                   association between
                   their genes.

                   Examples: polledness
                   in goats and
                   hermaphrodism
                   (intersex in the
                   homozygous female).
Genetic correlations and responses
                 • Extent to which the
                   genotypic values for one
                   trait predict the genotypic
                   values for the second
                   trait.
                 • Can be a positive or
                   negative relationship.
                   -1 ↔ +1
                 • Correlation can also be
                   due to environmental
                   influences.
Positive correlations (0-1)
            Birth weight   Weaning weight
       Weaning weight      Post weaning weight
   Post weaning weight     Yearling weight
            Rib eye area   Percent retail cuts
         Ovulation rate    Litter size
        Fecal egg count    FAMACHA© score
Fecal consistency score    Dag score
              Frame size   Carcass weight
 Scrotal circumference     Semen production
Ultrasound rib eye area    Actual rib eye area
(-1 – 0) Negative correlations
        Birth weight   Lambing ease
      Fleece weight    Fiber diameter
       Staple length   Fiber diameter
     Ovulation rate    Embryo survival
    Fecal egg count    Packed cell volume
No correlation (zero)
      Scrapie genotype     Production traits
Resistance to a disease    Resistance to another disease
     Reproductive rate     Growth and carcass traits
     Reproductive rate     Wool traits
        Horn condition     Productivity
                  Color    Productivity

    Genetic correlations tend to vary by breed and study.
Genetic defects
Simple recessive inheritance   More complicated
• Spider lamb syndrome         • Jaw defects
• Cryptorchidism               • Entropion
• Myotonia                     • Hernias
• Hairy lamb syndrome          • Teat defects
• Polledness in goats          • Structural defects
                               • Fleece defects
                               • Rectal and vaginal prolapse
                               • Birth (congenital) defects
Inheritance
• Each sperm and egg
  contains one
  chromosome from each
  pair of chromosomes of
  the parent.

• Which chromosome
  of a pair ends up in a
  particular sperm or egg
  is determined purely by
  chance.
Inheritance
          • There are 134,217,728
            (227) possible
            combinations of the 54
            or 60 chromosomes in a
            sperm or egg produced
            by a male and female.

?         • This results in
            considerable variation
            in the progeny from the
            same mating.
Genotype vs. Phenotype
GENOTYPE (G)                     PHENOTYPE (P)
• The genetic make-up of a       • The observable or
  cell, organism, or animal.       measurable traits of an
• Determines hereditary            organism: what we can see
  potential and limitations of     or measure.
  the individual.
                                 • Determined by
                                   genetics, plus
                                   environmental influences
                                   (E).



                                   P=G+E
Environmental influences
            • Diet
            • Health
            • Weather
            • Age
            • Type of birth and
              rearing
            • Age of dam
            • Housing
            • Season of birth
Which buck is better?
Two kinds of traits

1. Qualitative

2. Quantitative
   (or polygenic)
QUANTITATIVE
QUALITATIVE               • Continuous in
• Phenotype falls into      expression.
  specific category.      • Considerable variation
• Usually affect by         in phenotype.
  one or few genes.       • Under the influence
• Very little influence     of many genes
  of the environment.     • Much more
                            environmental
                            influence
Qualitative traits
•   Blood type
•   Eye color
•   Coat type
•   Fleece or coat color
•   Horns
•   Wattles
•   Beards
•   Inherited defects
    –   Entropion
    –   Spider lamb disease
    –   Cryptorchidism
    –   Myotonia
Quantitative traits
          •   Reproductive rate
          •   Growth rate
          •   Milk production
          •   Fiber production
          •   Carcass characteristics
          •   Disease resistance
          •   Conformation
          •   Wool shedding
          •   Feed efficiency
Quantitative traits

• Are usually
  the traits of
  greatest
  economic
  importance.
Methods of genetic improvement

               1. Crossbreeding

               2. Selection
Next webinar: Jan 29, 7 pm EST
“Breeding systems” with Jeff Semler
1 of 35

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Genetics 101

  • 1. 2013 Winter Webinar Series: Breeding Better Sheep & Goats Genetics 101 SUSAN SCHOENIAN Sheep & Goat Specialist University of Maryland Extension sschoen@umd.edu - www.sheepandgoat.com
  • 3. DNA (deoxyribonucleic acid) • The genetic material that controls how an animal looks and performs. • Exists as two long strands spiraled into a double helix. • Is organized into chromosomes.
  • 4. Chromosomes • Found in pairs in the nucleus of every cell of the body. • There are two kinds of chromosomes. 1. Autosomes 2. Sex chromosomes
  • 5. Species differ in the number of chromosomes they have. n=60 n=54 30 pairs 27 pairs
  • 6. AUTOSOMES SEX CHROMOSOMES • Comprise all but one pair • Every animal has one pair of chromosomes. of sex chromosomes. • (Mostly) control features • There are two types of sex the same in male and chromosomes denoted by females. the letters X and Y. • Females have two of the same kind of sex chromosomes (XX). • Males have two distinct sex chromosomes (XY).
  • 7. Sex determination • The sex of the offspring is determined by the sex chromosomes. • Males contribute either an X or Y chromosome, thus determine the sex of the offspring. • Diet may also affect sex ratio.
  • 8. Genes • A unit of inheritance composed of a segment of DNA. • Also in pairs. • Encodes the amino acid sequence of a protein. • Physical location of gene on DNA molecule is called a locus (loci).
  • 9. Alleles (usually denoted by letters) • An alternative form of a gene (one of the pair) that is located at a specific position of a specific chromosome. • Organisms have two alleles for each trait or the expression of a trait may be affected by multiple alleles.
  • 10. HOMOZYGOUS HETEROZYGOUS • When the two alleles are • When the two alleles are the same. different.
  • 11. RECESSIVE (lower case letter) • Allele that causes a DOMINANT (Capital letter) phenotypic trait that is only • One allele masks the seen in the homozygous expression of another allele genotype. at the same loci. • Overrides the traits of a A a recessive allele in a heterozygous pairing. AA A Aa a Aa aa
  • 12. Dominant traits in sheep and goats • Hairy fleece • Red, tan hair sheep • White wool (most breeds) • White goats • Red Boers • Polled • Brown eyes • Wattles
  • 13. Recessive traits in sheep and goats • Woolly fleece • Colored fleece (most breeds) • Horns • Blue eyes • Myotonia • Colored goats • Black Boers • Genetic defects – Spider lamb disease – Cryptorchidism – Entropion
  • 14. Incomplete or partial dominance • When the dominant allele is only partially dominant. • Example: scurs
  • 15. Sex-limited inheritance • Sex-linked - on X or Y chromosome Example: hemophilia • Sex-limited - all or none expressed by sex Example: milk production • Sex-influenced - genotype + sex determines phenotype Examples: horns in most sheep and beards in goats.
  • 16. Epistasis • When the action of one gene depends upon another. Example: fleece color, skin color, coat color • Inheritance of fleece and coat color can be complicated and varies by breed.
  • 17. Genetic linkages or co-inheritance • Traits that tend to be inherited together as a consequence of an association between their genes. Examples: polledness in goats and hermaphrodism (intersex in the homozygous female).
  • 18. Genetic correlations and responses • Extent to which the genotypic values for one trait predict the genotypic values for the second trait. • Can be a positive or negative relationship. -1 ↔ +1 • Correlation can also be due to environmental influences.
  • 19. Positive correlations (0-1) Birth weight Weaning weight Weaning weight Post weaning weight Post weaning weight Yearling weight Rib eye area Percent retail cuts Ovulation rate Litter size Fecal egg count FAMACHA© score Fecal consistency score Dag score Frame size Carcass weight Scrotal circumference Semen production Ultrasound rib eye area Actual rib eye area
  • 20. (-1 – 0) Negative correlations Birth weight Lambing ease Fleece weight Fiber diameter Staple length Fiber diameter Ovulation rate Embryo survival Fecal egg count Packed cell volume
  • 21. No correlation (zero) Scrapie genotype Production traits Resistance to a disease Resistance to another disease Reproductive rate Growth and carcass traits Reproductive rate Wool traits Horn condition Productivity Color Productivity Genetic correlations tend to vary by breed and study.
  • 22. Genetic defects Simple recessive inheritance More complicated • Spider lamb syndrome • Jaw defects • Cryptorchidism • Entropion • Myotonia • Hernias • Hairy lamb syndrome • Teat defects • Polledness in goats • Structural defects • Fleece defects • Rectal and vaginal prolapse • Birth (congenital) defects
  • 23. Inheritance • Each sperm and egg contains one chromosome from each pair of chromosomes of the parent. • Which chromosome of a pair ends up in a particular sperm or egg is determined purely by chance.
  • 24. Inheritance • There are 134,217,728 (227) possible combinations of the 54 or 60 chromosomes in a sperm or egg produced by a male and female. ? • This results in considerable variation in the progeny from the same mating.
  • 26. GENOTYPE (G) PHENOTYPE (P) • The genetic make-up of a • The observable or cell, organism, or animal. measurable traits of an • Determines hereditary organism: what we can see potential and limitations of or measure. the individual. • Determined by genetics, plus environmental influences (E). P=G+E
  • 27. Environmental influences • Diet • Health • Weather • Age • Type of birth and rearing • Age of dam • Housing • Season of birth
  • 28. Which buck is better?
  • 29. Two kinds of traits 1. Qualitative 2. Quantitative (or polygenic)
  • 30. QUANTITATIVE QUALITATIVE • Continuous in • Phenotype falls into expression. specific category. • Considerable variation • Usually affect by in phenotype. one or few genes. • Under the influence • Very little influence of many genes of the environment. • Much more environmental influence
  • 31. Qualitative traits • Blood type • Eye color • Coat type • Fleece or coat color • Horns • Wattles • Beards • Inherited defects – Entropion – Spider lamb disease – Cryptorchidism – Myotonia
  • 32. Quantitative traits • Reproductive rate • Growth rate • Milk production • Fiber production • Carcass characteristics • Disease resistance • Conformation • Wool shedding • Feed efficiency
  • 33. Quantitative traits • Are usually the traits of greatest economic importance.
  • 34. Methods of genetic improvement 1. Crossbreeding 2. Selection
  • 35. Next webinar: Jan 29, 7 pm EST “Breeding systems” with Jeff Semler