1. The RDFIO extension
A status update
tinyurl.com/getrdfio
SMWCon Fall 2013
Samuel Lampa
Dept. of Pharm. Biosciences, Uppsala University
t: @smllmp
b: saml.rilspace.org
g: samuel.lampa@gmail.com

2. What is RDFIO?
Google summer of code 2010
● Import RDF
● Query with SPARQL
● Complete rewrite done now
●
tinyurl.com/getrdfio

3. Import
Import RDF triples
● Write triples with SPARQL+
● Import (mirror) an external
SPARQL endpoint
●
tinyurl.com/getrdfio

4. RDFIO Architecture
tinyurl.com/getrdfio

5. RDFIO Architecture
tinyurl.com/getrdfio

6. RDFIO Architecture
tinyurl.com/getrdfio

7. tinyurl.com/getrdfio

8. tinyurl.com/getrdfio

9. tinyurl.com/getrdfio

16. “Poormans SPARQL endpoint mirroring”

19. Talk to SMW from Bioclipse
var wikiURL = "http://drugmet.rilspace.org/wiki/";
/* Editing SMW facts */
smw.addTriple("w:Caffeine", "w:is_a", "w:Molecule", wikiURL);
smw.removeTriple("w:Caffeine", "w:is_a", "w:Molecule", wikiURL);
/* Downloading RDF for local querying */
rdfStore = rdf.createInMemoryStore();
rdfStore = smw.getRDF( wikiURL );
result = rdf.sparql( rdfStore,
"SELECT DISTINCT ?pred WHERE { ?subj ?pred ?obj } LIMIT 10"
)
/* Show some output */
js.print( result );
→ bioclipse.net

20. Talk to SMW from Bioclipse

21. Pulling data from R
Credits: @EgonWillighagen
library(rrdf)
endpoint =
"http://127.0.0.1/mediawiki/index.php/Special:SPARQLEndpoin
t"
query = paste("PREFIX w: ",
"SELECT ?min ?max ?zeta WHERE ",
"{ ?inst a w:Category-3AMetalOxides . ",
" OPTIONAL { ?inst w:Property-3AHas_Size_Min ?min . }",
" OPTIONAL { ?inst w:Property-3AHas_Size_Max ?max . }",
" OPTIONAL { ?inst w:Property-3AHas_Zeta_potential ?
zeta . }",
"}"
);
http://chem-bla-ics.blogspot.com/2011/06/importing-nanotoxicity-data-with-sparql.html

22. Next steps for RDFIO
●
●
●
Editing via templates
Import triples per “page” (Idea: Varun
Ratnakar)
Your idea here ...

23. Thanks!
tinyurl.com/getrdfio
Samuel Lampa
Dept. of Pharm. Biosciences, Uppsala University
t: @smllmp
b: saml.rilspace.org
g: samuel.lampa@gmail.com