Managing environmental- molecular- and associated meta-data: The Micro B3 Information System

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A 5 minutes lightning talk about the approach the Micro B3 Information System takes to deliver integrated environmental and molecular data with associated metadata. Presented at Biodiversity Informatics Horizon 2013 conference (see http://conference.lifewatch.unisalento.it/index.php/EBIC/BIH2013)

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Managing environmental- molecular- and associated meta-data: The Micro B3 Information System

  1. 1. Managing environmental and molecular data and associated metadata: The Micro B3 Information System Microbial Genomics and Bioinformatics Research Group Renzo Kottmann rkottman@mpi-bremen.de Rome, 2013-09-05
  2. 2. Micro B3 is financially supported by the Ocean of Tomorrow Grant # 287589
  3. 3. Question How can we design data recording system to be able to pull information from associated resources?
  4. 4. Question How can we design data recording system to be able to pull information from associated resources? Answer Work with associated resources
  5. 5. Question How can we design data recording system to be able to pull information from associated resources? Answer Work with associated resources Work towards a common goal
  6. 6. Question How can we design data recording system to be able to pull information from associated resources? Answer Work with associated resources Work towards a common goal Be service oriented
  7. 7. Question How can we design data recording system to be able to pull information from associated resources? Answer Work with associated resources Work towards a common goal Be service oriented Seek professional software development support
  8. 8. Work with other resources: Micro B3 Connected
  9. 9. A common goal
  10. 10. Metadata Integration Pilot-OSD Samples Sample/DNA Sample/Material Sequences Sample/Environmental data App Dropbox CDI
  11. 11. Micro B3 Information System Scientists
  12. 12. Be service oriented RESTFul Web Services Defined API Standardized technologies • OSGi • JAX-RS • Secured  OAuth  OpenID  Role based
  13. 13. Ocean Sampling Day App Smartphone Application (Android, iPhone) • Early, consistent, digital metadata acquisition
  14. 14. Megx: Integral part of Micro B3 Information System
  15. 15. Seek professional software development support SME (>50)
  16. 16. Micro B3 is Open Source Commercial friendly Apache 2 License. Subversion • https://projects.mpi-bremen.de/micro-b3/svn/ Source Code Browser • https://colab.mpi-bremen.de/source/ Wiki • https://colab.mpi-bremen.de/wiki Issue Tracker • https://colab.mpi-bremen.de/its/
  17. 17. Thanks for your attention 1st Marine Board Forum: Marine data Challenges: from Observation to Information http://www.microb3.eu http://twitter.com/Micro_B3http://www.oceansamplingday.org Micro B3 is financially supported by the Ocean of Tomorrow Grant # 287589
  18. 18. This presentation by Renzo Kottmann is licensed under a Creative Commons Attribution- NonCommercial-ShareAlike 3.0 Unported License

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