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Misschien plaatje bijNatural Historical Archives as Digital
Challenge and Opportunity
Andreas Weber, PhD
Department of Science, Technology, and Policy Studies (STePS)
University of Twente
USE CASE
PROJECT: MAKING SENSE OF ILLUSTRATED HANDWRITTEN ARCHIVES (2016-2020)
• Archive of 17,000+ digitzed handwritten
and illustrated documents.
• 18 naturalists travelling in insular
Southeast Asia in the early 19th century.
• never fully studied and interlinked
(stored in Naturalis Biodiversity Center)
• Consortium project: NWO Creative
Industries, Brill publishers private
partner.
• Aims: 1] infrastructure (for researchers,
offered by Brill) and 2] a searchable
digital repository of the NC archive (for
historians/biologists and general public)
For more information on “Making Sense” project
and consortium see: www.brill.com/makingsense
SOME DESCRIBED ANIMALS CRITICALLY ENDANGERED
‘NATUURKUNDIGE COMMISSIE VAN NEDERLANDS-INDIË, 1820-1850’
THE ARCHIVE
MARITIME SOUTHEAST ASIA
AS AREA OF COLLECTION
A GARDEN AS HUB IN SOUTHEAST ASIA
harbour
garden
Botanical garden in Bogor:
• storage of notes and specimens
• processing of observations and collected items
(preparations, drawings)
• point of departure for expeditions
• local and global distribution of specimens and
knowledge
Field notes / traval diaries
Drawings
Publications
Links weak or
missing
… necessary for
humanities
and biodiversity
scholarship
THE PROBLEM
Specimens
VISUAL CHALLENGES
I. Mixes of French, Latin,
Dutch, Greek, Malay,
German and French.
II. Visual and textual
elements often intertwined.
III. Different writers and styles
often on one page.
Latin
German
SEMANTIC CHALLENGES (1) – SPECIES AND PLACE NAMES
1820s: Rhinolopi crumniferi Peron
insignis Horsf.
Present day: Hipposideros larvatus
Complex
taxonomical shifts
LINKING CHALLENGE (1) – REFERENCES
Peron, pl. 35
Voyage de découvertes aux terres
australes (1807-1816), co-edited by
M. F. Péron, pl. 35
LINKING CHALLENGE (2) – VISUAL REFERENCES
Inserted in field notes;
visual guide for fieldwork
Seba’s Cabinet of Couriosities
facsimile edition
HOW TO REALIZE ‘LINKING’ IN A DIGITAL ENVIRONMENT (1)
Wordzone labels
SEMI-AUTOMATED (SEMANTIC)
SYSTEM THAT ESTABLISHES LINKS
Links to sources
(external and
internal)
SEMI-AUTOMATED (SEMANTIC)
SYSTEM THAT ESTABLISHES LINKS
REALIZATION IN DIGITAL ENVIRONMENT (2)
SEMANTIC FIELDBOOK
ANNOTATOR
by LISE STORK
PhD Student,
Leiden University
Visual search engine for handwritten
material developed by L. Schomaker
MONK
AI handwriting recognition system,
developed by prof. L. Schomaker
Groningen University
Phd student: Mahya Ameryan
MONK AS HANDWRITING RECOGNITION SYSTEM
EXPERIENCES WITH MONK
• Tabula rasa approach ideal for NC
material
• Language independent
(currently MONK processes different forms of
Arabic, Chinese, Western handwriting of all ages
and kinds, as well as Dead Sea scrolls)
• Delivers sufficient precision and speed
for making illustrated handwritten
collections searchable!
• Scalable and reliable
Dead sea scrolls Chronicon Bohemorum
Chinese manuscripts Arabic manuscripts
LABEL WORDS (LINK)
HOW DOES IT WORK IN PRACTICE?
For the screencast see:
https://sites.google.com/naturali
s.nl/makingsenseproject/get-
involved/tutorial
HOW DOES IT WORK IN PRACTICE?
TRANSCRIBE LINES (LINK)
For the screencast see:
https://sites.google.com/naturali
s.nl/makingsenseproject/get-
involved/tutorial
HOW DOES IT WORK IN PRACTICE?
SELECT CORRECT LABELS IN HITLIST
For the screencast see:
https://sites.google.com/naturali
s.nl/makingsenseproject/get-
involved/tutorial
MONK OUTPUT
A. INDEX B. GROUNDWORK FOR FULL TEXT
TRANSCRIPTION
C. ENRICHED SCANS
-
Zunge
DESIRED LAYOUT (WITHIN MAKING SENSE PROJECT)
SPECIES
NAMES
PLACE
DATE
PERSON
WHICH BAT SPECIES
WERE COLLECTED AND
DRAWN IN JAVA
BETWEEN 1820 AND
1833?
VISUAL
FEATURES
24/02/2018
MORE INFORMATION
For more papers and posters see:
www.makingsenseproject.org
Springer Lecture Notes in
Computer Science (LNCS)
10605 (2018, in press)
 Handwritten digital biodiversity heritage collections create opportunities
for cutting-edge computer science research as well as for taxonomic,
historical ecology and history of science research.
 Challenge:
 Linking with technology is only starting point for contextualization of
archives (historians and biologists needed for interpretation)
CONCLUSION

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Natural Historical Archives as Digital Challenge and Opportunity - Andreas Weber, Department of Science, Technology, and Policy Studies (STePS) University of Twente

  • 1. Misschien plaatje bijNatural Historical Archives as Digital Challenge and Opportunity Andreas Weber, PhD Department of Science, Technology, and Policy Studies (STePS) University of Twente
  • 2. USE CASE PROJECT: MAKING SENSE OF ILLUSTRATED HANDWRITTEN ARCHIVES (2016-2020) • Archive of 17,000+ digitzed handwritten and illustrated documents. • 18 naturalists travelling in insular Southeast Asia in the early 19th century. • never fully studied and interlinked (stored in Naturalis Biodiversity Center) • Consortium project: NWO Creative Industries, Brill publishers private partner. • Aims: 1] infrastructure (for researchers, offered by Brill) and 2] a searchable digital repository of the NC archive (for historians/biologists and general public) For more information on “Making Sense” project and consortium see: www.brill.com/makingsense
  • 3. SOME DESCRIBED ANIMALS CRITICALLY ENDANGERED
  • 4. ‘NATUURKUNDIGE COMMISSIE VAN NEDERLANDS-INDIË, 1820-1850’ THE ARCHIVE MARITIME SOUTHEAST ASIA AS AREA OF COLLECTION
  • 5. A GARDEN AS HUB IN SOUTHEAST ASIA harbour garden Botanical garden in Bogor: • storage of notes and specimens • processing of observations and collected items (preparations, drawings) • point of departure for expeditions • local and global distribution of specimens and knowledge
  • 6. Field notes / traval diaries Drawings Publications Links weak or missing … necessary for humanities and biodiversity scholarship THE PROBLEM Specimens
  • 7. VISUAL CHALLENGES I. Mixes of French, Latin, Dutch, Greek, Malay, German and French. II. Visual and textual elements often intertwined. III. Different writers and styles often on one page. Latin German
  • 8. SEMANTIC CHALLENGES (1) – SPECIES AND PLACE NAMES 1820s: Rhinolopi crumniferi Peron insignis Horsf. Present day: Hipposideros larvatus Complex taxonomical shifts
  • 9. LINKING CHALLENGE (1) – REFERENCES Peron, pl. 35 Voyage de découvertes aux terres australes (1807-1816), co-edited by M. F. Péron, pl. 35
  • 10. LINKING CHALLENGE (2) – VISUAL REFERENCES Inserted in field notes; visual guide for fieldwork Seba’s Cabinet of Couriosities facsimile edition
  • 11. HOW TO REALIZE ‘LINKING’ IN A DIGITAL ENVIRONMENT (1) Wordzone labels SEMI-AUTOMATED (SEMANTIC) SYSTEM THAT ESTABLISHES LINKS Links to sources (external and internal)
  • 12. SEMI-AUTOMATED (SEMANTIC) SYSTEM THAT ESTABLISHES LINKS REALIZATION IN DIGITAL ENVIRONMENT (2) SEMANTIC FIELDBOOK ANNOTATOR by LISE STORK PhD Student, Leiden University Visual search engine for handwritten material developed by L. Schomaker MONK AI handwriting recognition system, developed by prof. L. Schomaker Groningen University Phd student: Mahya Ameryan
  • 13. MONK AS HANDWRITING RECOGNITION SYSTEM EXPERIENCES WITH MONK • Tabula rasa approach ideal for NC material • Language independent (currently MONK processes different forms of Arabic, Chinese, Western handwriting of all ages and kinds, as well as Dead Sea scrolls) • Delivers sufficient precision and speed for making illustrated handwritten collections searchable! • Scalable and reliable Dead sea scrolls Chronicon Bohemorum Chinese manuscripts Arabic manuscripts
  • 14. LABEL WORDS (LINK) HOW DOES IT WORK IN PRACTICE? For the screencast see: https://sites.google.com/naturali s.nl/makingsenseproject/get- involved/tutorial
  • 15. HOW DOES IT WORK IN PRACTICE? TRANSCRIBE LINES (LINK) For the screencast see: https://sites.google.com/naturali s.nl/makingsenseproject/get- involved/tutorial
  • 16. HOW DOES IT WORK IN PRACTICE? SELECT CORRECT LABELS IN HITLIST For the screencast see: https://sites.google.com/naturali s.nl/makingsenseproject/get- involved/tutorial
  • 17. MONK OUTPUT A. INDEX B. GROUNDWORK FOR FULL TEXT TRANSCRIPTION C. ENRICHED SCANS - Zunge
  • 18. DESIRED LAYOUT (WITHIN MAKING SENSE PROJECT) SPECIES NAMES PLACE DATE PERSON WHICH BAT SPECIES WERE COLLECTED AND DRAWN IN JAVA BETWEEN 1820 AND 1833? VISUAL FEATURES
  • 19. 24/02/2018 MORE INFORMATION For more papers and posters see: www.makingsenseproject.org Springer Lecture Notes in Computer Science (LNCS) 10605 (2018, in press)
  • 20.  Handwritten digital biodiversity heritage collections create opportunities for cutting-edge computer science research as well as for taxonomic, historical ecology and history of science research.  Challenge:  Linking with technology is only starting point for contextualization of archives (historians and biologists needed for interpretation) CONCLUSION