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How$BioSharing fits$into$the$publication$workflow
Mapping$standards$and$databases$in$the$life$sciences
Peter$McQuilton,$PhD
OUTLINE
• What is BioSharing?
• How can we help?
• Making a Collection, tailored to you or your users
A$web$based,$curated and$searchable.portal.where$biological
standards and$databases are$registered,$linked and$discoverable.
We$monitor$the$development$and$evolution$of$standards,$their$use$in$
databases$and$the$adoption$of$both$in$data$policies.$
Our mission: To help people make the
right choice
Researchers,$developers and$
curators lack$support$and$guidance$on$
which$format$or$checklist$standards$to$
use,$or$database$to$deposit$their$data.$
Journal1publishers,$funders and$
librarians do$not$have$enough$
information$to$make$informed$decisions$
on$which$content$standards$or$
database$to$recommended$in$policies,$
or$fund$or$implement.
Mapping Standards and Databases in
the Life Sciences
“Which standard should I use for this data, considering
I’d like to publish in X journal?
“Are we using the most up-to-date version of this standard?”
“What database/repository is recommended for my data/organism?”
I’m funded by X, which standards should I use for my data and in which
database should I deposit it?
Three interlinked registries
Linking between registries
STANDARD DATABASE
Search, filter, refine
Search, filter, refine
Advanced field-by-field search
Filter by:
• type of standard
• Biological domain (e.g. proteomics, anatomy)
• Accessibility
• Species
• Funder agency
… and more!
Refine by:
• Publication
• Maintainer
• Current or deprecated
Add, claim and link
Why claim?
Create your own Collection
Create your own Collection
Mapping Standards and Databases in
the Life Sciences
“Which standard should I use for this data, considering
I’d like to publish in X journal?
“Are we using the most up-to-date version of this standard?”
“What database/repository is recommended for my data/organism?”
I’m funded by X, which standards should I use for my data and in which
database should I deposit it?
The BioSharing Registry: connecting
data policies, standards and
databases in the life sciences
The products of the WG:
• principles for linking information about databases, content standards
and journal and funder policies in the life sciences
• these will be implemented in an existing registry (BioSharing)
The team
BioSharing @RDA
Thursday 24th September:
• Session 6 – 11:30 – Jean-Baptiste Say Amphitheater
Joint meeting of IG Metadata,
WG Metadata Standards Catalogs & WG BioSharing Registry
Friday 25th September:
• Session 8 – 11:30 – Robert Faure Amphitheater
Joint meeting of IG ELIXIR Bridging Force & WG BioSharing
Registry: Life Sciences and Sensitive Data
• Session 9 – 14:00 – Robert Faure Amphitheater
Joint meeting of IG Domain Repositories, IG Agriculture Data
Interest Group (IGAD), WG BioSharing Registry, IG RDA/CODATA Mate
rials Data, Infrastructure & Interoperability & WG Wheat Data
Interoperability …
Join the BioSharing Registry WG
@biosharing @drosophilic @SusannaASansone

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The BioSharing Registry: Connecting Data Policies, Standards and Databases

  • 2. OUTLINE • What is BioSharing? • How can we help? • Making a Collection, tailored to you or your users
  • 3.
  • 4. A$web$based,$curated and$searchable.portal.where$biological standards and$databases are$registered,$linked and$discoverable. We$monitor$the$development$and$evolution$of$standards,$their$use$in$ databases$and$the$adoption$of$both$in$data$policies.$
  • 5. Our mission: To help people make the right choice Researchers,$developers and$ curators lack$support$and$guidance$on$ which$format$or$checklist$standards$to$ use,$or$database$to$deposit$their$data.$ Journal1publishers,$funders and$ librarians do$not$have$enough$ information$to$make$informed$decisions$ on$which$content$standards$or$ database$to$recommended$in$policies,$ or$fund$or$implement.
  • 6. Mapping Standards and Databases in the Life Sciences “Which standard should I use for this data, considering I’d like to publish in X journal? “Are we using the most up-to-date version of this standard?” “What database/repository is recommended for my data/organism?” I’m funded by X, which standards should I use for my data and in which database should I deposit it?
  • 10. Search, filter, refine Advanced field-by-field search Filter by: • type of standard • Biological domain (e.g. proteomics, anatomy) • Accessibility • Species • Funder agency … and more! Refine by: • Publication • Maintainer • Current or deprecated
  • 11. Add, claim and link Why claim?
  • 12. Create your own Collection
  • 13. Create your own Collection
  • 14.
  • 15.
  • 16.
  • 17.
  • 18.
  • 19.
  • 20.
  • 21. Mapping Standards and Databases in the Life Sciences “Which standard should I use for this data, considering I’d like to publish in X journal? “Are we using the most up-to-date version of this standard?” “What database/repository is recommended for my data/organism?” I’m funded by X, which standards should I use for my data and in which database should I deposit it?
  • 22. The BioSharing Registry: connecting data policies, standards and databases in the life sciences The products of the WG: • principles for linking information about databases, content standards and journal and funder policies in the life sciences • these will be implemented in an existing registry (BioSharing)
  • 24. BioSharing @RDA Thursday 24th September: • Session 6 – 11:30 – Jean-Baptiste Say Amphitheater Joint meeting of IG Metadata, WG Metadata Standards Catalogs & WG BioSharing Registry Friday 25th September: • Session 8 – 11:30 – Robert Faure Amphitheater Joint meeting of IG ELIXIR Bridging Force & WG BioSharing Registry: Life Sciences and Sensitive Data • Session 9 – 14:00 – Robert Faure Amphitheater Joint meeting of IG Domain Repositories, IG Agriculture Data Interest Group (IGAD), WG BioSharing Registry, IG RDA/CODATA Mate rials Data, Infrastructure & Interoperability & WG Wheat Data Interoperability … Join the BioSharing Registry WG @biosharing @drosophilic @SusannaASansone