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Guillaume Lobet |
A VIEW FROM THE BENCH
@guillaumelobet
www.guillaumelobet.be
bit.ly/lobet-open-be
my own views,
as a scie...
Guillaume Lobet | 2
WHO I AM ?2 0 0 3
2 0 0 8
2 0 1 3
M AST ER IN BIO - ENGINEERING
PHD AGRONO M IC AL S CIENCE S
P O ST- ...
Guillaume Lobet | 3
SCIENTIFIC PIPELINE
PA P E R SD ATA A N A LY S I SE X P E R I M E N T
Guillaume Lobet | 4
THE JIF
CHURCH
Illustration from John R. McKiernan http://whyopenresearch.org/ bit.ly/academic_days_ta...
Guillaume Lobet | 5
Nature
Science
Cell
0 105
40
1 2 3 4 6 7 8 9 11 12
IF
https://quantixed.wordpress.com/2015/05/05/wrong...
Guillaume Lobet | 6
SCIENTIFIC PIPELINE
P O S T E R S
P R E S E N TAT I O N S
PA P E R S
L A B L I F E
R E A D PA P E R S
...
Guillaume Lobet | 7
OPEN
PAPERS
Illustration from John R. McKiernan
1
http://whyopenresearch.org/
Guillaume Lobet |
R E V I E W E R S
R E A DP U B L I S H
R E J E C T
8
PUBLISHING PIPELINE
M E
E D I T O R
Guillaume Lobet |
0$ 0$
$ 0$
$$$ 0$
0$ $$$
$$$ $$$
R E V I E W E R S
R E A DP U B L I S H
9
M E
Figure from Richard Sever ...
Guillaume Lobet | 10
PREPRINT SERVERS
• archive while submitting
• directly available
• freely available
• check specific j...
Guillaume Lobet | 11
OPEN
DATA2
Guillaume Lobet | 12
LETS TALK ABOUT YOUR DATA
EXPENSIVE TIME
CONSUMING
CONTAINS
MISTAKES
Ɲ
ARE NOT 100%
EXPLOITED
Guillaume Lobet | 13
DATA REPOSITORIES / JOURNALS
• Decrease the cost of data
• Increase reproducibility
• Allow new findin...
Guillaume Lobet | 14
https://opennessinitiative.org/
1. Data should be made publicly available.
2. Stimuli and materials s...
Guillaume Lobet | 15
RESEARCH PARASITES
Data Sharing. Longo and Drazen
N Engl J Med 2016; 374:276-277
“people who had noth...
Guillaume Lobet | 16
OPEN
CODE3
"Piled Higher and Deeper" by Jorge Cham www.phdcomics.com
Guillaume Lobet | 17
THE FAITH OF ACADEMIC SOFTWARES
tool development
funding for an in-house specialist
manual
publicatio...
Guillaume Lobet | 18
NOBODY LIKES BLACKBOXES
Illustration from John R. McKiernan http://whyopenresearch.org/
Guillaume Lobet | 19
REPRODUCIBILITY IS CRITICAL
Estimating the reproducibility of psychological science
Open Science Coll...
Guillaume Lobet | 20
CODE REPOSITORIES
• Collaboration -> long term maintenance
• Open source -> better debugging
• Versio...
Guillaume Lobet | 21
OPEN
EVERYTHING4
Picture from Pedro Albuquerque
Guillaume Lobet | 22
R E AD PAPE R S
EVERY STEP CAN BE OPEN
L AB L I F ER E V I E W I N G
Guillaume Lobet | 23
WRAPPING UP
GOOD FOR SCIENCE GOOD FOR YOU GOOD FOR THE PUBLIC
Reproducibility
Long term vision
Error ...
“The internet was built
in the first place to
share scientific data”
Presentation on figshare
bit.ly/lobet-open-be
Mark Hahne...
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OpenAire Sessions - Open Science - A view from the bench

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OpenAire Sessions - Open Science - A view from the bench

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OpenAire Sessions - Open Science - A view from the bench

  1. 1. Guillaume Lobet | A VIEW FROM THE BENCH @guillaumelobet www.guillaumelobet.be bit.ly/lobet-open-be my own views, as a scientist, about the importance of open science
  2. 2. Guillaume Lobet | 2 WHO I AM ?2 0 0 3 2 0 0 8 2 0 1 3 M AST ER IN BIO - ENGINEERING PHD AGRONO M IC AL S CIENCE S P O ST- DOC TOR AL F EL L OW UNI VER SI T É C AT HOL IQUE DE L O UVAIN UNI VER SI T É C AT HOL IQUE DE L O UVAIN UNI VER SI T É DE L IÈ GE 2 0 1 6 VI SI T ING S CIEN T I ST F OR S CH UNG S Z EN T RU M J UL ICH FNRS BELSPO FNRS YOU YOU YOU THANK YOU
  3. 3. Guillaume Lobet | 3 SCIENTIFIC PIPELINE PA P E R SD ATA A N A LY S I SE X P E R I M E N T
  4. 4. Guillaume Lobet | 4 THE JIF CHURCH Illustration from John R. McKiernan http://whyopenresearch.org/ bit.ly/academic_days_talk_2015@
  5. 5. Guillaume Lobet | 5 Nature Science Cell 0 105 40 1 2 3 4 6 7 8 9 11 12 IF https://quantixed.wordpress.com/2015/05/05/wrong-number-a-closer-look-at-impact-factors/ I F = # C I TAT I O N S / # PA P E R S [ D U R I N G T H E PA S T 2 Y E A R S ] IF = 42.352 …not representative…
  6. 6. Guillaume Lobet | 6 SCIENTIFIC PIPELINE P O S T E R S P R E S E N TAT I O N S PA P E R S L A B L I F E R E A D PA P E R S D ATA S E T S C O D E D ATA A N A LY S I SE X P E R I M E N T R E V I E W I N G
  7. 7. Guillaume Lobet | 7 OPEN PAPERS Illustration from John R. McKiernan 1 http://whyopenresearch.org/
  8. 8. Guillaume Lobet | R E V I E W E R S R E A DP U B L I S H R E J E C T 8 PUBLISHING PIPELINE M E E D I T O R
  9. 9. Guillaume Lobet | 0$ 0$ $ 0$ $$$ 0$ 0$ $$$ $$$ $$$ R E V I E W E R S R E A DP U B L I S H 9 M E Figure from Richard Sever (@cshperspectives), with data from Steve Royle (@clathrin) REDUCED ACCESS 6 MONTHS
  10. 10. Guillaume Lobet | 10 PREPRINT SERVERS • archive while submitting • directly available • freely available • check specific journal policy… http://www.sherpa.ac.uk/romeo/search.php R E V I E W E R S R E A DP U B L I S HM E …
  11. 11. Guillaume Lobet | 11 OPEN DATA2
  12. 12. Guillaume Lobet | 12 LETS TALK ABOUT YOUR DATA EXPENSIVE TIME CONSUMING CONTAINS MISTAKES Ɲ ARE NOT 100% EXPLOITED
  13. 13. Guillaume Lobet | 13 DATA REPOSITORIES / JOURNALS • Decrease the cost of data • Increase reproducibility • Allow new findings • Get more citations for your work …
  14. 14. Guillaume Lobet | 14 https://opennessinitiative.org/ 1. Data should be made publicly available. 2. Stimuli and materials should be made publicly available. 3. In case some data or materials are not open, clear reasons should be given why. 4. Documents containing details for interpreting any files or code, and how to compile and run any so ware programs should be made available with the above items. 5. The location of all of these files should be advertised in the manuscript, and all files should be hosted by a reliable third party. “We will not offer comprehensive review for, nor recommend the publication of, any manuscript that does not meet the following minimum requirements.“
  15. 15. Guillaume Lobet | 15 RESEARCH PARASITES Data Sharing. Longo and Drazen N Engl J Med 2016; 374:276-277 “people who had nothing to do with the design and execution of the study but use another group’s data for their own ends, possibly stealing from the research productivity planned by the data gatherers, or even use the data to try to disprove what the original investigators had posited” #RESEARCHPARASITES Illustration from @redpenblackpen
  16. 16. Guillaume Lobet | 16 OPEN CODE3 "Piled Higher and Deeper" by Jorge Cham www.phdcomics.com
  17. 17. Guillaume Lobet | 17 THE FAITH OF ACADEMIC SOFTWARES tool development funding for an in-house specialist manual publication use ???? no funding no publication no incentives
  18. 18. Guillaume Lobet | 18 NOBODY LIKES BLACKBOXES Illustration from John R. McKiernan http://whyopenresearch.org/
  19. 19. Guillaume Lobet | 19 REPRODUCIBILITY IS CRITICAL Estimating the reproducibility of psychological science Open Science Collaboration Science 28 Aug 2015:Vol. 349, Issue 6251, pp. $$$
  20. 20. Guillaume Lobet | 20 CODE REPOSITORIES • Collaboration -> long term maintenance • Open source -> better debugging • Version control -> archiving
  21. 21. Guillaume Lobet | 21 OPEN EVERYTHING4 Picture from Pedro Albuquerque
  22. 22. Guillaume Lobet | 22 R E AD PAPE R S EVERY STEP CAN BE OPEN L AB L I F ER E V I E W I N G
  23. 23. Guillaume Lobet | 23 WRAPPING UP GOOD FOR SCIENCE GOOD FOR YOU GOOD FOR THE PUBLIC Reproducibility Long term vision Error proofing Visibility Valorise everything More citations Better use of public money Access Everything can be shared!
  24. 24. “The internet was built in the first place to share scientific data” Presentation on figshare bit.ly/lobet-open-be Mark Hahnel figshare founder

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