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@openaire_eu
4th Community Call
OpenAIRE content providers managers
aggregation and enrichment processes
Alessia Bardi (CNR-ISTI), Andreas Czerniak (UNIBI), Pedro Príncipe (UMINHO)
04/03/2020
1) OpenAIRE Provide updates
2) OpenAIRE aggregation and enrichment processes
- The OpenAIRE Aggregator
- How to monitor the aggregation of your data source
- OpenAIRE enrichment processes
3) Questions & comments (please share your use cases, issues)
AGENDA:
Notes & Agenda ⇨ https://bit.ly/2rTgJwy
www.openaire.eu/provide-community-calls
OpenAIRE Provide – recent news
Dashboard UI/UX redesign
https://beta.provide.openaire.eu
(Coming soon - March)
Your participation is needed
(take part of the user board
Collection monitor feature
(aggregation history more complete)
Subscribe the newsletter
www.openaire.eu/past-cp-
newsletters/listing
Provide Public Roadmap
https://trello.com/b/JHbHKLZ
4/openaire-provide-roadmap
@openaire_eu
OpenAIRE aggregation and enrichment
processes: specifications and good practices
CNR & Bielefeld University
Community Call | 04 MAR 2020
The OpenAIRE
Aggregator
Community Call | 04 MAR 2020
how the
OpenAIRE
Research
Graph is
materialized
An open metadata research
graph of interlinked scientific
products, with access rights
information, linked to funding
information and research
communities
Graph: model for the representation of information
OpenAIRE uses it to represent objects in the scholarly communication domain and the relationships
that exist among them.
Edges of the graph are annotated with a label that specifies the semantics of the relationships
between two objects, each represented as a node in the graph.
The OpenAIRE Research Graph in numbers
Data sources 17K
Publications 37M
(deduplicated 8M with full-texts)
Datasets 975K
Software 52K
Projects 3M
Funders 22
Production
Data sources 10K
Publications 110M
(deduplicated, 10M with full-texts)
Datasets 2M
Software 43K
Projects 3M
Funders 29
Beta
… and more
Academic Graph
… and more
… and more
… and more European and international funders
… and more
… and more … and more
Collecting metadata, links, and full-texts
from more than 10K sources worldwide to
materialize a graph where entities of the
research life cycle are linked to each other
9
RAW
Aggregators
Repositories
Registries
OA Journals
Data sources
Publishers
Metadata,
relationships,
full-texts
Relationships
Metadata,
relationships,
full-texts
Metadata,
relationships
Aggregated data sources
CRIS
Community Call | 04 MAR 2020
Enrichment
10
Different records representing the
same entity (results or organization)
are merged in one
Mining full-texts and abstracts to
identify links (e.g. to projects, to
datasets, to software), affiliations,
subject classification, citations
Enrich records with information
about relevant research communities
and infrastructures based on the
provenance of the records and their
keywords.
Propagation
Enrich records based on information
available in the records that are
linked to them with a relationship
with “strong” semantics (e.g.
supplements/isSupplementTo)
RAW
OpenAIRE Research Graph
the supply chain
Integration Scenarios
● Directly harvested (from repositories, journals)
● Indirectly harvested (via aggregators, publishers)
○ see “collected from a compatible aggregator” in the Explore portal
○ records are marked to be collected from the aggregator and hosted by the
specific repository/journal (if resolvable via OpenDOAR/re3data/ISSN).
○ when the hosting source cannot be resolved, the record appears as
hosted by the “Unknown repository”
Community Call | 04 MAR 2020
OpenAIRE‘s Guidelines for
Open Science Content Providers
https://guidelines.openaire.eu
Community Call | 04 MAR 2020
How to join
14
OpenAIRE aggregator
Snapshot of
transformed
records
Aggregators
Repositories
Registries
OA Journals
Data sources
Publishers
transformation
collection
transformation
collection
transformation
collection
Aggregation workflow:
one per data source
RAW
Aggregation workflows
CRIS
Community Call | 04 MAR 2020
full-text collection
OpenAIRE aggregation team: UNIBI
Activities:
• Activate the aggregation workflow
• Check supplied data
• Configure transformation step to
• assign the proper typologies to records (literature, dataset, software, or
other)
• address metadata quality imperfections
• Contact repository managers
• suggest improvements
• ask for permission to download Open Access full-texts
Aggregation of metadata
Aggregated record and Data Source Types
Publications
• Article
• Preprint
• Report
• Patent
• …
Datasets
• Dataset
• Collection
• Clinical Trial
• …
Software
• Research
Software
• …
Other Research
Products
• Service
• Workflow
• Interactive
Resource
• …
Institutional/
publication
repositories
Journals/
publishers
Data
repositories
Other
Products
repositories
Software
repositories
CRIS
Community Call | 04 MAR 2020
• OpenAIRE collects them but do not re-distribute them
• OpenAIRE explore portal will send the user to your URL
• OpenAIRE as a way to get new users/more accesses to your platform
• OpenAIRE runs mining algorithms to enrich the available metadata
• You can get back this information via the Broker
• Let other repository know that you have an Open Access version of the paper
• OpenAIRE is directly connected to the EC participant portal:
• If an Open Access version of the paper is known to exist, the life of the project
coordinator will be easier...
Open Access full-texts
How to monitor your
aggregation
workflow?
Community Call | 04 MAR 2020
Collection monitor
Each box is an aggregation stage: COLLECT or
TRANSFORM
Collection monitor
Collection mode:
- REFRESH: OpenAIRE collected
everything
- INCREMENTAL: OpenAIRE
collected only records that have
been updated since the previous
collection
Collection monitor
The number of records is different: some had to be
discarded by the aggregation team.
Suggestion:
validate your repository and check the report.
Collection monitor
The portal
shows the
metadata
collected in this
date...
...but only these number of records get into
the pipeline
Look for the OpenAIRE logo
This version of the metadata is still
not visible in the portal
OpenAIRE
enrichment
processes
Community Call | 04 MAR 2020
• Infer information with full-text and data mining
• Fostering PIDs
• Propagation of ORCID IDs
• Improve discovery
• Propagation of abstracts between articles, datasets, and
software
• Improve monitoring
• Propagation of organizations from institutional data sources to
relative products and from products to linked products with
same authors
Enrichment of the graph
OpenAIRE-Advance Kick off | Athens | 17-19 Jan 2018
• Under implementation - Introduce relevant links
between scientific products, for example:
• Rapid view of science: identify links between articles and
relative presentations
• Hidden research software: identify link to URLs targeting rar
and zip archives
Enrichment of the graph
OpenAIRE-Advance Kick off | Athens | 17-19 Jan 2018
Enrichment
27
Different records representing the
same entity (results or organization)
are merged in one
Mining full-texts and abstracts to
identify links (e.g. to projects, to
datasets, to software), affiliations,
subject classification, citations
Enrich records with information
about relevant research communities
and infrastructures based on the
provenance of the records and their
keywords.
Propagation
Enrich records based on information
available in the records that are
linked to them with a relationship
with “strong” semantics (e.g.
supplements/isSupplementTo)
RAW
OpenAIRE Research Graph
the supply chain
Metadata records corresponding to
equivalent objects are merged.
Pre-print, post-print, published
versions are considered equivalent
for stats & monitoring purposes
Harvested
publications
160Mi
Unique publications
110Mi
Enriching metadata
Inference
Assign research products to
communities/infrastructures based on their
provenance, subjects
Info deduction
Abstracts, links to projects, countries,
communities/infrastructures, ORCID ids
from a research product to other products
Info propagation
10Mi OA
full-texts
Mining output
• Text-mined links
• 130Mi
• Links to projects, software,
datasets, research
infra/communities,
similarities
• Text-mined values
• 178Mi
• Citations, abstract, subject
classification terms
Coming soon:
links to patents
(EPO/PATSTAT)
subject: s
part_of
r
csubjects:[s, s1, … , sn]
Example
Under consideration:
propagation of organization from one
product to another linked to it with
“supplementedBy/supplementTo”
1) OpenAIRE Provide updates
2) OpenAIRE aggregation and enrichment processes
- The OpenAIRE Aggregator
- How to monitor the aggregation of your data source
- OpenAIRE enrichment processes
3) Questions & comments (please share your use cases, issues)
AGENDA:
Notes & Agenda ⇨ https://bit.ly/2rTgJwy
www.openaire.eu/provide-community-calls
Upcoming calls
April 1st - main topic: DSpace-CRIS for OpenAIRE: implementation of the CRIS guidelines and beyond
www.openaire.eu/provide-community-calls
Subscribe to our newsletter!
www.openaire.eu/past-cp-newsletters
Thank you!
www.openaire.eu/provide-community-calls
Alessia Bardi (CNR-ISTI), alessia.bardi@isti.cnr.it
Andreas Czerniak (UNIBI), openaire-helpdesk@uni-bielefeld.de
Pedro Príncipe (UMINHO), pedroprincipe@sdum.uminho.pt

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4th Content Providers Community Call

  • 1. @openaire_eu 4th Community Call OpenAIRE content providers managers aggregation and enrichment processes Alessia Bardi (CNR-ISTI), Andreas Czerniak (UNIBI), Pedro Príncipe (UMINHO) 04/03/2020
  • 2. 1) OpenAIRE Provide updates 2) OpenAIRE aggregation and enrichment processes - The OpenAIRE Aggregator - How to monitor the aggregation of your data source - OpenAIRE enrichment processes 3) Questions & comments (please share your use cases, issues) AGENDA: Notes & Agenda ⇨ https://bit.ly/2rTgJwy www.openaire.eu/provide-community-calls
  • 3. OpenAIRE Provide – recent news Dashboard UI/UX redesign https://beta.provide.openaire.eu (Coming soon - March) Your participation is needed (take part of the user board Collection monitor feature (aggregation history more complete) Subscribe the newsletter www.openaire.eu/past-cp- newsletters/listing Provide Public Roadmap https://trello.com/b/JHbHKLZ 4/openaire-provide-roadmap
  • 4. @openaire_eu OpenAIRE aggregation and enrichment processes: specifications and good practices CNR & Bielefeld University Community Call | 04 MAR 2020
  • 5. The OpenAIRE Aggregator Community Call | 04 MAR 2020 how the OpenAIRE Research Graph is materialized
  • 6. An open metadata research graph of interlinked scientific products, with access rights information, linked to funding information and research communities Graph: model for the representation of information OpenAIRE uses it to represent objects in the scholarly communication domain and the relationships that exist among them. Edges of the graph are annotated with a label that specifies the semantics of the relationships between two objects, each represented as a node in the graph.
  • 7. The OpenAIRE Research Graph in numbers Data sources 17K Publications 37M (deduplicated 8M with full-texts) Datasets 975K Software 52K Projects 3M Funders 22 Production Data sources 10K Publications 110M (deduplicated, 10M with full-texts) Datasets 2M Software 43K Projects 3M Funders 29 Beta
  • 8. … and more Academic Graph … and more … and more … and more European and international funders … and more … and more … and more Collecting metadata, links, and full-texts from more than 10K sources worldwide to materialize a graph where entities of the research life cycle are linked to each other
  • 10. Enrichment 10 Different records representing the same entity (results or organization) are merged in one Mining full-texts and abstracts to identify links (e.g. to projects, to datasets, to software), affiliations, subject classification, citations Enrich records with information about relevant research communities and infrastructures based on the provenance of the records and their keywords. Propagation Enrich records based on information available in the records that are linked to them with a relationship with “strong” semantics (e.g. supplements/isSupplementTo) RAW OpenAIRE Research Graph the supply chain
  • 11. Integration Scenarios ● Directly harvested (from repositories, journals) ● Indirectly harvested (via aggregators, publishers) ○ see “collected from a compatible aggregator” in the Explore portal ○ records are marked to be collected from the aggregator and hosted by the specific repository/journal (if resolvable via OpenDOAR/re3data/ISSN). ○ when the hosting source cannot be resolved, the record appears as hosted by the “Unknown repository” Community Call | 04 MAR 2020
  • 12. OpenAIRE‘s Guidelines for Open Science Content Providers https://guidelines.openaire.eu Community Call | 04 MAR 2020
  • 14. 14 OpenAIRE aggregator Snapshot of transformed records Aggregators Repositories Registries OA Journals Data sources Publishers transformation collection transformation collection transformation collection Aggregation workflow: one per data source RAW Aggregation workflows CRIS Community Call | 04 MAR 2020 full-text collection
  • 15. OpenAIRE aggregation team: UNIBI Activities: • Activate the aggregation workflow • Check supplied data • Configure transformation step to • assign the proper typologies to records (literature, dataset, software, or other) • address metadata quality imperfections • Contact repository managers • suggest improvements • ask for permission to download Open Access full-texts Aggregation of metadata
  • 16. Aggregated record and Data Source Types Publications • Article • Preprint • Report • Patent • … Datasets • Dataset • Collection • Clinical Trial • … Software • Research Software • … Other Research Products • Service • Workflow • Interactive Resource • … Institutional/ publication repositories Journals/ publishers Data repositories Other Products repositories Software repositories CRIS Community Call | 04 MAR 2020
  • 17. • OpenAIRE collects them but do not re-distribute them • OpenAIRE explore portal will send the user to your URL • OpenAIRE as a way to get new users/more accesses to your platform • OpenAIRE runs mining algorithms to enrich the available metadata • You can get back this information via the Broker • Let other repository know that you have an Open Access version of the paper • OpenAIRE is directly connected to the EC participant portal: • If an Open Access version of the paper is known to exist, the life of the project coordinator will be easier... Open Access full-texts
  • 18. How to monitor your aggregation workflow? Community Call | 04 MAR 2020
  • 19.
  • 20. Collection monitor Each box is an aggregation stage: COLLECT or TRANSFORM
  • 21. Collection monitor Collection mode: - REFRESH: OpenAIRE collected everything - INCREMENTAL: OpenAIRE collected only records that have been updated since the previous collection
  • 22. Collection monitor The number of records is different: some had to be discarded by the aggregation team. Suggestion: validate your repository and check the report.
  • 23. Collection monitor The portal shows the metadata collected in this date... ...but only these number of records get into the pipeline Look for the OpenAIRE logo This version of the metadata is still not visible in the portal
  • 25. • Infer information with full-text and data mining • Fostering PIDs • Propagation of ORCID IDs • Improve discovery • Propagation of abstracts between articles, datasets, and software • Improve monitoring • Propagation of organizations from institutional data sources to relative products and from products to linked products with same authors Enrichment of the graph OpenAIRE-Advance Kick off | Athens | 17-19 Jan 2018
  • 26. • Under implementation - Introduce relevant links between scientific products, for example: • Rapid view of science: identify links between articles and relative presentations • Hidden research software: identify link to URLs targeting rar and zip archives Enrichment of the graph OpenAIRE-Advance Kick off | Athens | 17-19 Jan 2018
  • 27. Enrichment 27 Different records representing the same entity (results or organization) are merged in one Mining full-texts and abstracts to identify links (e.g. to projects, to datasets, to software), affiliations, subject classification, citations Enrich records with information about relevant research communities and infrastructures based on the provenance of the records and their keywords. Propagation Enrich records based on information available in the records that are linked to them with a relationship with “strong” semantics (e.g. supplements/isSupplementTo) RAW OpenAIRE Research Graph the supply chain Metadata records corresponding to equivalent objects are merged. Pre-print, post-print, published versions are considered equivalent for stats & monitoring purposes Harvested publications 160Mi Unique publications 110Mi
  • 28. Enriching metadata Inference Assign research products to communities/infrastructures based on their provenance, subjects Info deduction Abstracts, links to projects, countries, communities/infrastructures, ORCID ids from a research product to other products Info propagation 10Mi OA full-texts Mining output • Text-mined links • 130Mi • Links to projects, software, datasets, research infra/communities, similarities • Text-mined values • 178Mi • Citations, abstract, subject classification terms Coming soon: links to patents (EPO/PATSTAT) subject: s part_of r csubjects:[s, s1, … , sn] Example Under consideration: propagation of organization from one product to another linked to it with “supplementedBy/supplementTo”
  • 29. 1) OpenAIRE Provide updates 2) OpenAIRE aggregation and enrichment processes - The OpenAIRE Aggregator - How to monitor the aggregation of your data source - OpenAIRE enrichment processes 3) Questions & comments (please share your use cases, issues) AGENDA: Notes & Agenda ⇨ https://bit.ly/2rTgJwy www.openaire.eu/provide-community-calls
  • 30. Upcoming calls April 1st - main topic: DSpace-CRIS for OpenAIRE: implementation of the CRIS guidelines and beyond www.openaire.eu/provide-community-calls
  • 31. Subscribe to our newsletter! www.openaire.eu/past-cp-newsletters
  • 32. Thank you! www.openaire.eu/provide-community-calls Alessia Bardi (CNR-ISTI), alessia.bardi@isti.cnr.it Andreas Czerniak (UNIBI), openaire-helpdesk@uni-bielefeld.de Pedro Príncipe (UMINHO), pedroprincipe@sdum.uminho.pt