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Bioschemas Adoption Meeting: Training materials and Events

Presentation about Training materials and events specifications at the Bioschemas Adoption Meeting on 2nd October 2017. Presentation given by Niall Beard. Shows the aggregation use case of Bioschemas - showing adoption of the schema.org and a new tool for importing schema.org annotations

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Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge
Bioschemas Adoption meeting
Events and Training Materials Schema
(Aggregation use case + New importer tools for TeSS)
Niall Beard
ELIXIR-TeSS Project Manager
University of Manchester
Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge
Bioschemas and TeSS
• TeSS aggregates links + metadata about Life
science events and training materials and displays
them in a portal.
• To aggregate - TeSS team write scrapers to parse
HTML, RSS feeds, ICS calendars, APIs – anything
structured - and add to TeSS
• We created one of the very first Bioschemas
specifications! To allow content providers to be
included in the registry more quickly and reliably
by adding simple structured data to their site.
Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge
Bioschemas and TeSS
• We’ve had lots of Bioschemas adoption by
training content providers.
• Formats of programmatically ingested training
resource feeds in TeSS:
• ICS file format 5
• RSS feed 2
• HTML scraping 3
• Bioschemas 14
• GitHub YAML 2
• Read API 4
Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge
Semi-Automated Bioschemas Importer
• Introducing a new tool in TeSS. Not in
production yet
• Automatically parses any schema.org/Event or
schema.org/CreativeWork resources ready for
inclusion in TeSS
Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge
Create a new content provider or select an existing one
Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge
Input URL of webpage containing training events or materials that are:
a) annotated in schema.org JSON-LD or RDFA format or
b) in an .ics file format

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Bioschemas Adoption Meeting: Training materials and Events

  • 1. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge Bioschemas Adoption meeting Events and Training Materials Schema (Aggregation use case + New importer tools for TeSS) Niall Beard ELIXIR-TeSS Project Manager University of Manchester
  • 2. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge Bioschemas and TeSS • TeSS aggregates links + metadata about Life science events and training materials and displays them in a portal. • To aggregate - TeSS team write scrapers to parse HTML, RSS feeds, ICS calendars, APIs – anything structured - and add to TeSS • We created one of the very first Bioschemas specifications! To allow content providers to be included in the registry more quickly and reliably by adding simple structured data to their site.
  • 3. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge Bioschemas and TeSS • We’ve had lots of Bioschemas adoption by training content providers. • Formats of programmatically ingested training resource feeds in TeSS: • ICS file format 5 • RSS feed 2 • HTML scraping 3 • Bioschemas 14 • GitHub YAML 2 • Read API 4
  • 4. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge Semi-Automated Bioschemas Importer • Introducing a new tool in TeSS. Not in production yet • Automatically parses any schema.org/Event or schema.org/CreativeWork resources ready for inclusion in TeSS
  • 5. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge Create a new content provider or select an existing one
  • 6. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge Input URL of webpage containing training events or materials that are: a) annotated in schema.org JSON-LD or RDFA format or b) in an .ics file format
  • 7. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge The importer downloads the page, extracts the metadata of any events of training materials, and displays it in a ‘staging area’
  • 8. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge Use the ‘details’ button to see all the extracted metadata about each resource
  • 9. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge The ‘staging area’ alerts the importer to resources already existing inTeSS
  • 10. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge Select which resources you wish to import
  • 11. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge The importer bulk creates all the selected events
  • 12. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge Issues • Formatting + Data at source page must be perfect for this to be effective – We usually write custom scrapers that download a page, extract the metadata and save. – This gives us the flexibility to write custom modifications to data • Normalization: GB -> United Kingdom • Supplement: Lookup Lat/Lon of event based on street address • Correction: Fix formatting issues • Clear visualization of what data can be extracted. Could be a useful tool for helping providers annotate with Bioschemas – then create a custom scraper with mods
  • 13. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge Issues • Can’t discover new resources – TeSS scrapers are run each night and any new resources discovered are added to TeSS – The importer tool forces users to make explicit choices about which resources should be added – Having an ‘Add anything you find’ creation policy can lead to issues. Lots of schema.org generated within CMSs that might be unintended • We could send manual prompts to content provider owners asking to confirm whether newly discovered resources should be added
  • 14. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge Training Resource Schemas Review • GOBLET AGM, Portugal – Thursday 23rd November 2017 – Full day – Review Events and Training materials specifications: • Refine mandatory terms • Improve coverage • Adapt to current best practices with input from training community • In collaboration with GOBLETs Standards Committee • Will publish report of activity. http://mygoblet.org/about-us/goblet- events/goblet-agm-2017-oeiras
  • 15. Bioschemas Implementation Study Adoption Meeting | Hinxton, Cambridge Thanks! • Any Questions? • Slides are available on Slideshare: • https://slideshare.net/NiallBeard • Visit TeSS at: • https://tess.elixir-europe.org