Visual exploration of scientific literature using VOSviewer and CitNetExplorer

Nees Jan van Eck
Nees Jan van EckSenior Researcher at Centre for Science and Technology Studies
Visual exploration of scientific literature using
VOSviewer and CitNetExplorer
Nees Jan van Eck
Centre for Science and Technology Studies (CWTS), Leiden University
ICTeSSH 2020 Conference
July 1, 2020
Explosive growth of scientific literature
1
“A new scientific paper is published
every 30 seconds and there are
10,000 updates to PubMed every day”
“It is impossible for humans alone to
process all of the complex information
potentially available to them for the
advancement of scientific research”
James Chandler, November 2016, BenevolentAI
Bibliographic data sources
2
Bibliographic data sources
3
Web of Science Scopus Dimensions
Journals 20,000 25,000 50,000
Publications 60 million 50 million 110 million
Citations 1.4 billion 1.5 billion 1.2 billion
Bibliometric networks
4
WoS
Scopus
Dimensions
MAG
PubMed
Crossref
Citation network
of pubs / journals / authors / orgs / countries
Co-authorship network
of authors / orgs / countries
Co-citation network
of pubs / journals / authors / orgs / countries
Co-occurrence network
of keywords / terms
Bibliographic coupling network
of pubs / journals / authors
Bibliographic
data source
Outline
• Software tools
– VOSviewer
– CitNetExplorer
• Network analysis techniques
• Algorithmically constructed classification system of science
5
VOSviewer
6
Users of VOSviewer
• Researchers
• Research institutions
• Research funders
• Scientific publishers
• Industry
7
8
9
Text mining
10
JOI
Scientometrics
JASIST
Development
11
Types of networks supported by each data source
12
Co-authorship Co-occurrence Citation Bibliographic
coupling
Co-citation
Web of Science     
Scopus     
Dimensions     
PubMed     
Crossref     
Europe PMC     
Microsoft Academic     
Semantic Scholar     
OCC / COCI     
Wikidata     
Data access
13
Download
Interactive querying
14
15
16
17
CitNetExplorer
18
Network analysis
techniques
19
Network analysis techniques
20
Layout:
• AKA mapping
• Visualization of similarities (VOS)
Clustering:
• AKA community detection
• Leiden algorithm
VOS
21
Leiden algorithm
22
Algorithmic
classification systems
of science
23
CWTS publication-level classification system of
science
• Based on all articles, reviews, and proceedings papers in Web of Science
from the period 2000-2019
• 29.8 million publications
• 520.5 million citation links
• Classification system of 3 hierarchical levels:
– 23 broad disciplines
– 805 fields
– 4,013 subfields
• Computational performance using the Leiden algorithm: less than 2hrs
24
25
Breakdown of scientific literature into 4,013 subfields
Social sciences
and humanities
Biomedical and
health sciences
Life and earth
sciences
Mathematics and
computer science
Physical
sciences and
engineering
Scientometrics
Size of a field is
proportional to the
number of publications in
the field
Summary of scientometrics subfield
26
Cluster: 108
No. publications: 24,317
Top 5 terms No. pubs
peer review 802
bibliometric analysis 1,563
h index 347
publication 2,255
impact factor 718
Top 5 publications No. cits
hirsch, je (2005). an index to quantify an individual's scientific research output. proc nat acad sci usa, 102(46), 16569 3,690
wuchty, s; et al. (2007). the increasing dominance of teams in production of knowledge. science, 316(5827), 1036 995
van eck, nj; et al. (2010). software survey: vosviewer, a computer program for bibliometric mapping. scientometrics, 84(2), 523 988
chen, cm (2006). citespace ii: detecting and visualizing emerging trends and transient patterns in scientific literature. j am soc inf sci technol, 57(3), 359 801
moss-racusin, ca; et al. (2012). science faculty's subtle gender biases favor male students. proc nat acad sci usa, 109(41), 16474 789
Top 5 authors No. pubs Top 5 journals No. pubs
bornmann, l 281 scientometrics 3,285
leydesdorff, l 252 proceedings of the international conference on scientometrics and informetrics 1,003
rousseau, r 199 journal of informetrics 837
thelwall, m 164 journal of the american society for information science and technology 576
glanzel, w 154 plos one 424
Top 5 institutes No. pubs Top 5 departments No. pubs
leiden univ 382 ctr sci & technol studies (leiden univ) 167
indiana univ 370 ctr sci & technol studies cwts (leiden univ) 149
katholieke univ leuven 354 amsterdam sch commun res ascor (univ amsterdam) 146
univ granada 306 sch informat management (wuhan univ) 144
univ amsterdam 293 sch lib & informat sci (indiana univ) 141
0
500
1,000
1,500
2,000
2,500
2000 2002 2004 2006 2008 2010 2012 2014 2016 2018
No.publications
Publications in scientometrics subfield
27
Term map of scientometrics field
28
Peer review,
careers, and
gender
Networks analysis
and patents
Collaboration
Medical research
open access
Scientometric
indicators
Time-line map of highly cited scientometrics publications
29
30
Overlay visualizations
Social sciences
and humanities
Biomedical and
health sciences
Life and earth
sciences
Mathematics and
computer science
Physical
sciences and
engineering
31
Time trend
Social sciences
and humanities
Biomedical and
health sciences
Life and earth
sciences
Mathematics and
computer science
Physical
sciences and
engineering
32
Time trend
Physical
sciences and
engineering
MicroRNA
Graphene
Summary of graphene subfield
33
Cluster: 14
No. publications: 39,564
Top 5 terms No. pubs
graphene oxide 10,327
epitaxial graphene 596
bilayer graphene 1,046
graphene field effect transistor 309
Top 5 publications No. cits
novoselov, ks; et al. (2004). electric field effect in atomically thin carbon films. science, 306(5696), 666 36,165
geim, ak; et al. (2007). the rise of graphene. nat mater, 6(3), 183 25,419
castro neto, ah; et al. (2009). the electronic properties of graphene. rev mod phys, 81(1), 109 14,462
novoselov, ks; et al. (2005). two-dimensional gas of massless dirac fermions in graphene. nature, 438(7065), 197 13,791
ferrari, ac; et al. (2006). raman spectrum of graphene and graphene layers. phys rev lett, 97(18) 11,432
Top 5 authors No. pubs Top 5 journals No. pubs
taniguchi, t 349 physical review b 3,510
watanabe, k 346 carbon 1,772
wang, y 263 applied physics letters 1,676
zhang, y 256 rsc advances 921
peeters, fm 219 nano letters 870
Top 5 institutes No. pubs Top 5 departments No. pubs
chinese acad sci 2,023 inst phys (chinese acad sci) 314
russian acad sci 686 sch phys & math sci (nanyang technol univ) 307
tsinghua univ 629 dept phys (natl univ singapore) 287
nanyang technol univ 628 sch phys & astron (univ manchester) 231
peking univ 608 inst ciencia mat madrid (csic) 216
0
1,000
2,000
3,000
4,000
5,000
2000 2002 2004 2006 2008 2010 2012 2014 2016 2018
No.publications
Leiden University
34
Social sciences
and humanities
Biomedical and
health sciences
Life and earth
sciences
Mathematics and
computer science
Physical
sciences and
engineering
China
35
Social sciences
and humanities
Biomedical and
health sciences
Life and earth
sciences
Mathematics and
computer science
Physical
sciences and
engineering
Coronavirus related research
36
risk analysis
tourism
complex networks /
epidemics
Math./models infectious
deceases
crisis communication /
management
social media
Do it yourself!
37
www.vosviewer.com www.citnetexplorer.nl
Course: Visualizing Science Using VOSviewer
• January 26-29, 2021
• 4 half-day online sessions
• Participants are introduced into the main techniques for visualizing science
• Special attention is paid to applications in a research evaluation and
research management context
• The course has an interactive format and the small group size allows
participants to practice extensively with the VOSviewer software
• www.cwts.nl
38
Thank you for your attention!
39
Further reading
40
Further reading
41
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Visual exploration of scientific literature using VOSviewer and CitNetExplorer

  • 1. Visual exploration of scientific literature using VOSviewer and CitNetExplorer Nees Jan van Eck Centre for Science and Technology Studies (CWTS), Leiden University ICTeSSH 2020 Conference July 1, 2020
  • 2. Explosive growth of scientific literature 1 “A new scientific paper is published every 30 seconds and there are 10,000 updates to PubMed every day” “It is impossible for humans alone to process all of the complex information potentially available to them for the advancement of scientific research” James Chandler, November 2016, BenevolentAI
  • 4. Bibliographic data sources 3 Web of Science Scopus Dimensions Journals 20,000 25,000 50,000 Publications 60 million 50 million 110 million Citations 1.4 billion 1.5 billion 1.2 billion
  • 5. Bibliometric networks 4 WoS Scopus Dimensions MAG PubMed Crossref Citation network of pubs / journals / authors / orgs / countries Co-authorship network of authors / orgs / countries Co-citation network of pubs / journals / authors / orgs / countries Co-occurrence network of keywords / terms Bibliographic coupling network of pubs / journals / authors Bibliographic data source
  • 6. Outline • Software tools – VOSviewer – CitNetExplorer • Network analysis techniques • Algorithmically constructed classification system of science 5
  • 8. Users of VOSviewer • Researchers • Research institutions • Research funders • Scientific publishers • Industry 7
  • 9. 8
  • 10. 9
  • 13. Types of networks supported by each data source 12 Co-authorship Co-occurrence Citation Bibliographic coupling Co-citation Web of Science      Scopus      Dimensions      PubMed      Crossref      Europe PMC      Microsoft Academic      Semantic Scholar      OCC / COCI      Wikidata     
  • 16. 15
  • 17. 16
  • 18. 17
  • 21. Network analysis techniques 20 Layout: • AKA mapping • Visualization of similarities (VOS) Clustering: • AKA community detection • Leiden algorithm
  • 25. CWTS publication-level classification system of science • Based on all articles, reviews, and proceedings papers in Web of Science from the period 2000-2019 • 29.8 million publications • 520.5 million citation links • Classification system of 3 hierarchical levels: – 23 broad disciplines – 805 fields – 4,013 subfields • Computational performance using the Leiden algorithm: less than 2hrs 24
  • 26. 25 Breakdown of scientific literature into 4,013 subfields Social sciences and humanities Biomedical and health sciences Life and earth sciences Mathematics and computer science Physical sciences and engineering Scientometrics Size of a field is proportional to the number of publications in the field
  • 27. Summary of scientometrics subfield 26 Cluster: 108 No. publications: 24,317 Top 5 terms No. pubs peer review 802 bibliometric analysis 1,563 h index 347 publication 2,255 impact factor 718 Top 5 publications No. cits hirsch, je (2005). an index to quantify an individual's scientific research output. proc nat acad sci usa, 102(46), 16569 3,690 wuchty, s; et al. (2007). the increasing dominance of teams in production of knowledge. science, 316(5827), 1036 995 van eck, nj; et al. (2010). software survey: vosviewer, a computer program for bibliometric mapping. scientometrics, 84(2), 523 988 chen, cm (2006). citespace ii: detecting and visualizing emerging trends and transient patterns in scientific literature. j am soc inf sci technol, 57(3), 359 801 moss-racusin, ca; et al. (2012). science faculty's subtle gender biases favor male students. proc nat acad sci usa, 109(41), 16474 789 Top 5 authors No. pubs Top 5 journals No. pubs bornmann, l 281 scientometrics 3,285 leydesdorff, l 252 proceedings of the international conference on scientometrics and informetrics 1,003 rousseau, r 199 journal of informetrics 837 thelwall, m 164 journal of the american society for information science and technology 576 glanzel, w 154 plos one 424 Top 5 institutes No. pubs Top 5 departments No. pubs leiden univ 382 ctr sci & technol studies (leiden univ) 167 indiana univ 370 ctr sci & technol studies cwts (leiden univ) 149 katholieke univ leuven 354 amsterdam sch commun res ascor (univ amsterdam) 146 univ granada 306 sch informat management (wuhan univ) 144 univ amsterdam 293 sch lib & informat sci (indiana univ) 141 0 500 1,000 1,500 2,000 2,500 2000 2002 2004 2006 2008 2010 2012 2014 2016 2018 No.publications
  • 29. Term map of scientometrics field 28 Peer review, careers, and gender Networks analysis and patents Collaboration Medical research open access Scientometric indicators
  • 30. Time-line map of highly cited scientometrics publications 29
  • 31. 30 Overlay visualizations Social sciences and humanities Biomedical and health sciences Life and earth sciences Mathematics and computer science Physical sciences and engineering
  • 32. 31 Time trend Social sciences and humanities Biomedical and health sciences Life and earth sciences Mathematics and computer science Physical sciences and engineering
  • 34. Summary of graphene subfield 33 Cluster: 14 No. publications: 39,564 Top 5 terms No. pubs graphene oxide 10,327 epitaxial graphene 596 bilayer graphene 1,046 graphene field effect transistor 309 Top 5 publications No. cits novoselov, ks; et al. (2004). electric field effect in atomically thin carbon films. science, 306(5696), 666 36,165 geim, ak; et al. (2007). the rise of graphene. nat mater, 6(3), 183 25,419 castro neto, ah; et al. (2009). the electronic properties of graphene. rev mod phys, 81(1), 109 14,462 novoselov, ks; et al. (2005). two-dimensional gas of massless dirac fermions in graphene. nature, 438(7065), 197 13,791 ferrari, ac; et al. (2006). raman spectrum of graphene and graphene layers. phys rev lett, 97(18) 11,432 Top 5 authors No. pubs Top 5 journals No. pubs taniguchi, t 349 physical review b 3,510 watanabe, k 346 carbon 1,772 wang, y 263 applied physics letters 1,676 zhang, y 256 rsc advances 921 peeters, fm 219 nano letters 870 Top 5 institutes No. pubs Top 5 departments No. pubs chinese acad sci 2,023 inst phys (chinese acad sci) 314 russian acad sci 686 sch phys & math sci (nanyang technol univ) 307 tsinghua univ 629 dept phys (natl univ singapore) 287 nanyang technol univ 628 sch phys & astron (univ manchester) 231 peking univ 608 inst ciencia mat madrid (csic) 216 0 1,000 2,000 3,000 4,000 5,000 2000 2002 2004 2006 2008 2010 2012 2014 2016 2018 No.publications
  • 35. Leiden University 34 Social sciences and humanities Biomedical and health sciences Life and earth sciences Mathematics and computer science Physical sciences and engineering
  • 36. China 35 Social sciences and humanities Biomedical and health sciences Life and earth sciences Mathematics and computer science Physical sciences and engineering
  • 37. Coronavirus related research 36 risk analysis tourism complex networks / epidemics Math./models infectious deceases crisis communication / management social media
  • 38. Do it yourself! 37 www.vosviewer.com www.citnetexplorer.nl
  • 39. Course: Visualizing Science Using VOSviewer • January 26-29, 2021 • 4 half-day online sessions • Participants are introduced into the main techniques for visualizing science • Special attention is paid to applications in a research evaluation and research management context • The course has an interactive format and the small group size allows participants to practice extensively with the VOSviewer software • www.cwts.nl 38
  • 40. Thank you for your attention! 39