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  1. 1. Presented by: Ellen J. Cramer Ph.D. Research Associate Cornell University ejc12@cornell.edu A Closer Look at VIVO
  2. 2. Cornell University: Dean Krafft (Cornell PI), Elly Cramer (Co-PI), Manolo Bevia, Jim Blake, Nick Cappadona, Brian Caruso, Jon Corson-Rikert, Elizabeth Hines, Huda Khan, Brian Lowe, Joseph McEnerney, Holly Mistlebauer, Stella Mitchell, Anup Sawant, Christopher Westling, Tim Worrall, Rebecca Younes. University of Florida: Mike Conlon (VIVO and UF PI), Chris Barnes, Cecilia Botero, Kerry Britt, Amy Buhler, Ellie Bushhousen, Linda Butson, Chris Case, Christine Cogar, Valrie Davis, Mary Edwards, Nita Ferree, Chris Haines, Rae Jesano, Margeaux Johnson, Sara Kreinest, Meghan Latorre, Yang Li, Hannah Norton, Narayan Raum, Alexander Rockwell, Sara Russell Gonzalez, Nancy Schaefer, Dale Scheppler, Nicholas Skaggs, Matthew Tedder, Michele R. Tennant, Alicia Turner, Stephen Williams. Indiana University: Katy Borner (IU PI), Kavitha Chandrasekar, Bin Chen, Shanshan Chen, Jeni Coffey, Suresh Deivasigamani, Ying Ding, Russell Duhon, Jon Dunn, Poornima Gopinath, Julie Hardesty, Brian Keese, Namrata Lele, Micah Linnemeier, Nianli Ma, Robert H. McDonald, Asik Pradhan Gongaju, Mark Price, Yuyin Sun, Chintan Tank, Alan Walsh, Brian Wheeler, Feng Wu, Angela Zoss. Ponce School of Medicine: Richard J. Noel, Jr. (Ponce PI), Ricardo Espada Colon, Damaris Torres Cruz, Michael Vega Negrón. The Scripps Research Institute: Gerald Joyce (Scripps PI), Catherine Dunn, Brant Kelley, Paula King, Angela Murrell, Barbara Noble, Cary Thomas, Michaeleen Trimarchi. Washington University School of Medicine in St. Louis: Rakesh Nagarajan (WUSTL PI), Kristi L. Holmes, Caerie Houchins, George Joseph, Sunita B. Koul, Leslie D. McIntosh. Weill Cornell Medical College: Curtis Cole (Weill PI), Paul Albert, Victor Brodsky, Mark Bronnimann, Adam Cheriff, Oscar Cruz, Dan Dickinson, Richard Hu, Chris Huang, Itay Klaz, Kenneth Lee, Peter Michelini, Grace Migliorisi, John Ruffing, Jason Specland, Tru Tran, Vinay Varughese, Virgil Wong. This project is funded by the National Institutes of Health, U24 RR029822, "VIVO: Enabling National Networking of Scientists". VIVO Collaboration:
  3. 3. In September 2009, seven institutions received $12.2 million in funding from the National Center for Research Resources of the NIH to to enable National Networking with VIVO •Originally developed at Cornell University in 2004 to support Life Sciences •Reimplemented using RDF, OWL, Jena and SPARQL in 2007 •Now covers all faculty, researchers and disciplines at Cornell •Implemented at University of Florida in 2007 •Underlying system in use at Chinese Academy of Sciences and Australian Universities VIVO history… born in the library
  4. 4. VIVO is: Populated with detailed profiles of faculty and researchers; displaying items such as publications, teaching, service, and professional affiliations. A powerful search functionality for locating people and information within or across institutions. An open-source semantic web application that enables the discovery of research and scholarship across disciplines in an institution.
  5. 5. Who uses VIVO? …and many more! Faculty/Scholar/Researcher/Scientist •Find collaborators •Track competitors •Keep abreast of new work •Rely on customizable profiles maintained via automatic updates Student •Locate mentors, advisors, or collaborators •Locate events, seminars, courses, programs, facilities •Showcase own research Administrator •Showcase college, program, departmental activities •Identify areas of institutional strength •Manage data in one place Donor/ Funding Agency •Discover current funded projects •Search for specialized expertise •Visualize research activity within an institution
  6. 6. VIVO’s semantic advantage Data modeled as bidirectional relationships
  7. 7. Faceted search, browse, and ontology hierarchy
  8. 8. Why Libraries? • Are a trusted, neutral entity • Have a tradition of service and support • Strive to serve all missions of the institution • Are technology centers and have IT and data expertise • Have skills—information organization, instruction, usability, subject expertise • Have close relationships with their clients (buy in) • Understand user needs • Understand the importance of collaboration and know how to bring people together • Have knowledge of institution, research, education, clinical landscape Librarians: Libraries:
  9. 9. Library staff as facilitators Oversight of initial content development • Oversee content, local ontology and interface refinement • Negotiate with campus data stewards for publicly visible data Support and training: local and national level • Use existing VIVO documentation, presentation/demo templates • Provide support, web site FAQs, etc. Communication/liaising • Engage with potential collaborators, participants • Usability: Feedback, new use cases from users to implementation team
  10. 10. VIVO harvests much of its data programmatically from verified sources • Reduces the need for manual input of data • Provides an integrated and flexible source of publicly visible data at an institutional level Data, data, data Individuals may also edit and customize their profiles to suit their professional needs. External data sources Internal data sources
  11. 11. http://gradeducation.lifesciences.cornell.edu/ http://research.cals.cornell.edu Repurposing and re-using data
  12. 12.  Stored in Resource Description Framework (RDF) triples  Uses the shared VIVO Core Ontology to describe people, organizations, activities, publications, events, interests, grants, and other relationships  Incorporates Friend-of-a-Friend (FOAF) and Bibliographic Ontology (BIBO)  Supports local ontology extensions for institution-specific needs Data in VIVO: Semantic Web standards Subject Predicate (verb) Object Riha, Susan research area crop management Riha, Susan international geographic focus Brazil Riha, Susan submitter of impact statement Climate change and its impact on the distribution of invasive weeds Riha, Susan selected publication (authorship) Biomass, harvestable area, and forest structure estimated from commercial timber inventories and remotely sensed imagery in southern Amazonia
  13. 13. Mike Conlon’s VIVO profile
  14. 14. Mike Conlon’s VIVO profile as Linked Data
  15. 15. Detailed relationships for a researcher Andrew McDonald author of has author research area research area for academic staff in academic staff Susan Riha Mining the record: Historical evidence for… author of has author teaches research area for research area headed by NYS WRI Earth and Atmospheric Sciences crop management CSS 4830 Cornell’s supercomputers crunch weather data to help farmers manage chemicals head of faculty appointment in faculty members taught by featured in features person
  16. 16. Visualizing relationships
  17. 17. Visuali- zation Ponce VIVO WashU VIVO Scripps VIVO UF VIVO IU VIVO WCMC VIVO Cornell VIVO RDF Triple Store RDF Triple Store Future VIVO Future VIVO Future VIVO Other RDF Other RDF Other RDF Prof. Assn. Triple Store Regional Triple Store Search Other RDF Search Linked Open Data National networking
  18. 18. http://vivoweb.org http://vivo.sourceforge.org THANK YOU! Questions?

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