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Dna damage,repair

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description of different types damage and the repair to be done in the damage and explanation of sos response

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Dna damage,repair

  1. 1. DNA REPAIR D.INDRAJA
  2. 2. REPAIR --- ? (when should be done) DAMAGEREPAIR RATE OF DNA DAMAGE = RATE OF DNA REPAIR Healthy cell RATE OF DNA DAMAGE > RATE OF DNA REPAIR Diseased cell
  3. 3. Why only DNA but not RNA,Protein,lipid etc All these others can be replaced but DNA must be preserved
  4. 4.
  5. 5. DNA Damage
  6. 6. C U A  H MC T G X
  7. 7. • What does DNA have to do with cancer? Cancer occurs when cells divide in an uncontrolled way, ignoring normal "stop" signals and producing a tumor. This bad behavior is caused by accumulated mutations, or permanent sequence changes in the cells' DNA. • Replication errors and DNA damage are actually happening in the cells of our bodies all the time. In most cases, however, they don’t cause cancer, or even mutations. That’s because they are usually detected and fixed by DNA proofreading and repair mechanisms. Or, if the damage cannot be fixed, the cell will undergo programmed cell death (apoptosis) to avoid passing on the faulty DNA. • Mutations happen, and get passed on to daughter cells, only when these mechanisms fail. Cancer, in turn, develops only when multiple mutations in division-related genes accumulate in the same cell.
  8. 8. Mechanisms used by cells to correct replication errors and fix DNA damage • Proofreading DNA polymerases are the enzymes that build DNA in cells. During DNA replication (copying), most DNA polymerases can “check their work” with each base that they add. This process is called proofreading. If the polymerase detects that a wrong (incorrectly paired) nucleotide has been added, it will remove and replace the nucleotide right away, before continuing with DNA synthesis.
  9. 9. DNA Repair DNA repair is a collection of processes by which a cell identifies and corrects damage to the DNA molecules that encode its genome •It takes place before the cell divison takes place that is G2 phase of cell cycle
  10. 10. Mechanism of mismatch repair
  11. 11. Mismatch repair -Based on which end
  12. 12. E.coli Humans and other eukaryotes
  13. 13. Sos response when there is UV damage in DNA then the replication fork stalling occurs it is recovered by the process of photoreactivation by the enzyme photolyases then repairs uv damaged DNA DNA damage by U.V Replication fork stalling Photo reactivation photolyases Repairs UV damaged DNA
  14. 14. • When the DNA damage is extensive there is no use of photolyases then the replication fork stalling is by-passed by sos response which first involves NER(nucleotide excision repair) and when the damage is not cured then DNA translesion synthesis (pol V) occurs (sos repair) which bypass the RNA polymerase with out curing so it is called as error prone repair Extensive DNA damage Replication fork stalling photolyases By pass Sos response NER DNA translesion synthesis (fails)
  15. 15. • During normal growth the sos genes are negatively regulated by lexA repressor protein dimers.under normal conditions lexA binds to 20bp consenses sequence the sos box in the promoter region for those genes • Activation of sos genes occurs after DNA damage by the accumulation of ss DNA regions generated at replication forks where DNA polymerase is blocked .
  16. 16. Rec A forms a filament around these ss DNA regions in ATP dependent fashion and become activated .the activated form of Rec A interacts with the lex A repressor to facilitate the lex A repressors self clevage from the promoter
  17. 17. • Operators that bind lex A weakly are the first to be fully expressed in this way lex A can sequentially activate different mechanisms of repair genes having a weak sos box thus the first sos repair mechanism to be induced is NER whose aim to fix DNA damage with out commitment to a full fledged sos response if NER do not fix the DNA damage then pol V is synthesized UVR-A gene UMU C gene UMU D gene DNA polymerase V (translesion synthesis) UVR ABC Endonuclease NER DNA damage Rec A Initiates autocatalysis Clevage of lexA RNA POL lexA
  18. 18. Protein kinases

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