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IBM Genomic Medicine Overview Article (Elsevier Oct, 2014 Edition)

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IBM Genomic Medicine in Healthcare Article (Elsevier Health Policy and Technology, Volume 3, Issue 4, December 2014, Pages 223–225)

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IBM Genomic Medicine Overview Article (Elsevier Oct, 2014 Edition)

  1. 1. journal homepage: www.elsevier.com/locate/hlpt Available online at www.sciencedirect.com The roleofgenomicmedicinein transforminghealthcare Heather Frasera,n, AdityaPaib aIBM, UnitedKingdom bIBM, Canada Availableonline22October2014 For thepastthirteenyears,sincethe first draftofthe Human GenomeProjectwasannounced,hopeshavebeen high forgenomicmedicinetobethepromiseformany health conditionsfromdiagnosistotreatment.Afterthe project wascompletein2003 [1], theinitialexamplesof success didnotmatchthesehighexpectations.Buttoday there isarenewedoptimisminthehealthcareindustry. The decreasedcostofwhole-genomesequencingalongwith new advancesincognitivecomputinganddrugdiscoveryhas created anewparadigmwheregenomicdatawillsoonbe combined withelectronichealthdata.Careprovidersare increasingly relyingongenomicdatatoaddanotherlevel of personalizationtoanindividual'scareplan.Cognitive computing andotheranalyticstechnologiescanprovidefor precision carewheredecisionsupportenablesareliable diagnosis andcareplan,alongwithtreatmentoptions. Although manychallengesstillexist,genomicmedicine has nowmovedfromavisiontoreality.Itexistsinsmall,but increasing clustersacrossthehealthcareecosystemwith examples rangingfromthepredictionofdrugresponseto the diagnosisofdisease,throughtotheidentification of targeted therapies.Thisadvanceispartlyduetomajor advances thathaveoccurredinnext-generationsequencing, genome-wide associationstudiesandbioinformatics.In addition, ourviewofthehumangenomehasexpandedto a broaderviewofthe human asanecosystem [2]. So whatisdifferenttodayandwhatisdrivingthisnew level ofoptimismforthefutureofgenomicmedicine? Technologicalinnovation: High-performancecomputing is instepwiththatofgenediscovery,whole-genome sequencing costandspeedandmakingtheprocessingof large datasetseasier.Inaddition,theadventofcogni- tive computingwhichhasallowedsystemstomakeuseof natural languageprocessingandmachinelearningto ingest largeandever-expandingdatavolumes. Market demand: Theincreasedexpectationandmarket demand fortargetedproducts,suchasdrugsandtests, can offersignificant andfasteradvantagesoverthe traditional industrymethods.Genomicsisalsoconver- ging withsocialmedia,asevidencedbythesharingof health experiencesandquestionsonline.Thisconver- gence hasledtonear-instantdisseminationofnew discoveries, aswellasnewformsofsocialandscientific collaboration. Consumerism: Growingcommercializationofgenomicsis evidenced bytheincreaseduptakeofdirect-to-consumer genomic testing,andinmorerecentregulatoryconcerns and recommendationsaboutsuchtechnologies. [3] Reg- ulatory andlegislativeprecedents [4,5] to protectcon- sumers ofgenomicdatahaveledtoincreasedawareness of itssensitivenature. Genomic medicineissettobea “game-changer” for healthcare ecosystemstakeholdersincludingpatients,pro- viders, researchers,payers,diagnosticcompanies,policy makers, lifesciencesandgovernmentswithsignificant impacts alreadyunderway: Growing useofanewgenomichealthrecord In thenextfewyears,itislikelythatanindividualwho interacts withthehealthcaresystemwillhaveagenome- based electronicrecordor “genomic healthrecord.” This http://dx.doi.org/10.1016/j.hlpt.2014.10.005 2211-8837/ 2014 FellowshipofPostgraduateMedicine.PublishedbyElsevierLtd.Allrightsreserved. nCorrespondingauthor. E-mail addresses: HFRASER@uk.ibm.com (H. Fraser), ditya.pai@ca.ibm.com (A. Pai). Health PolicyandTechnology(2014) 3, 223–225
  2. 2. record wouldextractandintegraterelevantelectronic health datawithaperson'sgenomedataandbeusedin parallel withotherelectronichealthcaresystemsfordeci- sion support,prevention,customizedtestingandtreat- ments. [6] Initially therecordmaynotcontainthewhole genome sequence,justtheresultsfromtestingspecific genes. Adoption ofgenomichealthrecordscanprovideacom- pletely differentlevelofdecisionsupporttousersof genomic datathroughtheapplicationofcognitivecomput- ing. [7] It hasthepotentialtobringuniqueadvancesto translational medicineandtoclinicaldecisionsupportat the pointofcarethroughtwocapabilities:understanding natural languagetextorspeechduringdiagnosisandtreat- ment; andinterrogatingvastvolumesofmedicalinforma- tion toprovideanaccurate,probabilisticanswer. Based ontheavailabilityofaccuratemoleculardiagnostic tests, targetedtreatmentsandagreaterunderstandingof pathways andgenesthatleadtospecific cancers,aselect group ofcancerswouldbeexcellentcandidatestobeused as aninitialstep.Withthemassiveexpansionofknowledge across varioushealthconditions,aperson'sgenomichealth record couldprovidetheultimatesourceofpersonalization for acareprovider-creatinganentirelynewapproachto care deliverythatispersonalizedusingmolecularinforma- tion onindividualsandcombinedwiththeirmostcurrent healthcare status. Greater benefits forstakeholdersineach genomic medicinecornerstone As thegenomichealthrecordevolves,eachofthethree cornerstones ofgenomicmedicine(see Figure 1) standsto benefit substantially: 1. Sequencing: Sequencinghasbecomebothmoreeconom- icalandmuchfasterthaninrecentyears.However, Figure 1 Three cornerstonesofgenomicmedicine:sequencing,translationalmedicineandpersonalizedmedicine. H. Fraser,A.Pai 224
  3. 3. clinicalreliabilityofsuchlarge-scalesequencingefforts remainsinquestion,especiallywhenwhole-genome sequencinginformationcouldbeusedfortranslational medicineandclinicaldecisionmaking.Newadvancesin whole-genomesequencingtechnologyhaveledtogreater throughputofsequencingdataatadecreasingcost.And whenfaster,cheapermachinesoperateinparallel,thou- sandsofwholegenomesequencescouldbegenerated annually. 2. Translationalmedicine: Translationalmedicinecan broadly encompasstheneedfornewmethodologies and solutionstounderstanddiseasemechanisms.It includes thediscoveryofbiomarkers,genome-specific data models,andtheintegrationofgenomicand non-genomic analyticscapabilitiestodiscoverclinically useful insights.Translationalmedicinethushasmany diverse datainputs,suchasgenesequencedata,and phenotypic andenvironmentalinformation.Althoughthe capability torapidlyandcheaplysequencethehuman genome isimportant,translationalmedicineanalyzes genome datawithcorrespondingphenotypeinformation to providetherealvaluetoresearcherswhocan share andvalidatetreatmentinsightsamongtransla- tional medicinecommunitiestoimprovehealthcareand advance personalizedhealthcare. 3. Personalized healthcare: Personalizedhealthcare focuses onanindividualandtheabilityofaclinicianto provide uniquetreatmentbasedonthepatient'spersonal characteristics. Genomicmedicinewilladdevenmore complexity forgeneticists,geneticcounselorsandspe- cialists, suchasmedicaloncologistswhomustlinka person's genomicsequencetoappropriateevidence- based personalizedtreatments.Threespecific areasin personalized healthcareareexpectedtostandout:even more advancesincognitivecomputing;greateruseof disease progressionmodels;andagrowingimpactof genomic medicineononcology.Oncologyisthe first area in medicinewheretheimpactofgenomicmedicinehas already beendocumentedfrompredispositiontestingto diagnosis, toprecisiontreatmentwithatargeteddrug [8]. Withareductioninsequencingcosts,theavailability of multipleoncologydiagnosticpanels,therapidprolif- eration oftargetedtreatmentsandanewparadigmof cognitive computing,theoncology field isonethat should quicklyexperiencethebenefits frompersona- lized/precision careandanewgenomichealthrecord. Conclusion A newgenomichealthrecordwillbecomearealityas genomic informationismergedwithdatafromthetradi- tional electronicmedicalrecord.Rapid,precisiononcology decision supportisexpectedtoexpandonalargerscaleby performing sophisticatedgenomeanalysiscoupledwith cognitive computing.Thecapabilitiesandtechnologies associated withcognitivecomputingarecriticaltothe ongoing genomicmedicineevolutionbyenablingmuchmore sophisticated decisionsupport,innovativeclinicaltrials, new targetedtherapies,andafocusonhealthoutcomes to preventandalleviatediseasesymptoms. Funding None. Competing interests None declared. Ethical approval Not required. Acknowledgments Further insightonthissubjectisavailableinthe following paper: Pai,A.,T.KoyamaandL.Lee. “The evolvingpromiseof genomic medicine:Howadvancedtechnologiesaretrans- forming healthcareandlifesciences.” IBM Institutefor Business Value.June2014. 〈http://www-935.ibm.com/ser vices/us/gbs/thoughtleadership/genomicmedicine/〉. For moreinformationpleasecontactHeatherFraser,IBM Institute forBusinessValueGlobalLeadforHealthcareand Life Sciencesathfraser@uk.ibm.com. References [1] NationalInstitutesofHealth.Anoverviewofthehumangenome project: whatwasthehumangenomeproject?NationalHuman Genome ResearchInstitute.November8,2012. 〈http://www. genome.gov/12011238〉. [2] McCarthy JJ,McLeodHL,Ginsburg.GS.Genomicmedicine:a decade ofsuccesses,challenges,andopportunities.SciTransl Med 2013;5:189sr4. [3] PolliF.Why23andmedeservesasecondchance.ForbesJanuary 2014. 〈http://www.forbes.com/sites/fridapolli/2014/01/14/ why-23andme-deserves-a-second-chance/〉. [4] GeneticInformationNondiscriminationAct(GINA)of2008. National HumanGenomeInstitute. 〈http://www.genome.gov/ 24519851〉. [5] PerkelJM.Genepatentsdecision:everybodywins.Scientist June 2013. 〈http://www.the-scientist.com/?articles.view/arti cleNo/36076/title/Gene-Patents-Decision–Everybody-Wins/〉. [6] FridlyJ,SimonRM,WalrathJC,RoachN,BullerR,Schenkein DP, etal.Considerationsforthesuccessfulco-developmentof targeted cancertherapiesandcompaniondiagnostics.NatRev Drug Discov2013;12:743–55. 〈http://www.nature.com/nrd/jour nal/v12/n10/abs/nrd4101.html?WT.ec_id=NRD-201310〉. [7] Cognitivecomputing.IBMResearch. 〈http://www.research.ibm. com/cognitive-computing/index.shtml〉. [8] BursteinHJ.ThedistinctivenatureofHER2-positivebreast cancers. NEnglJMed2005;353(16):1652–4. 〈http://www.nejm. org/doi/full/10.1056/NEJMp058197〉. The 225 roleofgenomicmedicineintransforminghealthcare

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