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E-infrastructure for open agri-food sciences: Vision & Roadmap

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Presentation by Odile Hologne (INRA) during the Interest Group on Agricultural Data (IGAD) Pre-Meeting in RDA11 held in Berlin

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E-infrastructure for open agri-food sciences: Vision & Roadmap

  1. 1. eROSA has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 730988 E-infrastructure for open agri-food sciences – vision and roadmap Odile Hologne, INRA, Head of the department of scientific information eROSA coordinator @Holo_08 Johannes Keizer, e-ROSA consultant @H2020_eROSA http://www.erosa.aginfra.eu/
  2. 2. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 Agenda e-ROSA in brief and context Overview of the landscape Vision Conclusion
  3. 3. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 eROSA in brief Coordination and support action (infrasupp 3 2016) 18 months Started in January 2017 Consortium: INRA (FR), WUR Alterra (NL), Agroknow (GR) « Brother » project: AgINFRA+ : prototype new services ▪ Support small-size foresight roadmaps for research and education communities and operators of e-infrastructure services. ▪ Identification of potential collaboration from stakeholders across different geographic areas and scientific domains.
  4. 4. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 Objectives Community building: researchers in agri-food sciences and ICT specialists; international Improve the knowledge of the landscape: infra/e-infra, projects, policies … relevant for an « e-infra for open science in agriculture » Roadmap: conception, advocacy
  5. 5. e-ROSA approach Stakeholder Workshops ① ② ③ We are here !
  6. 6. What we have done so far Bibliometric analysis > Initial scoping of the e-ROSA community, updating in progress Online map > Cataloguing key stakeholders, initiatives and infrastructures; ongoing open call First Stakeholder Workshop: 6-7 July 2017 in Montpellier > Initiate comunity-building and improve knowledge of the current landscape Second Stakeholder Workshop: 27-28 November 2017 in Wageningen > Identify scientific and data/ICT needs and discuss the vision Vision paper http://www.erosa.aginfra.eu/sites/erosa_deliverables/D1.1.pdf http://www.aginfra.eu/discover http://www.erosa.agin fra.eu/node/47 http://www.erosa.aginfra.eu/node/8
  7. 7. Horizon 2020 research and innovation programme - grant agreement No 730988 Open Harvest – 06/02 2017 European initiatives build an internet of FAIR data and Services (for machines) ✓ Improve & federate existing structures (standards, interoperability, governance, financing) based on user needs ✓ Incentives for data sharing in science & training
  8. 8. Quick overview of the actual landscape
  9. 9. http://www.aginfra.eu/discover http://www.aginfra.eu AgINFRA/e-ROSA online map Godan data ecosystem wg
  10. 10. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 Data challenges in agricultural sciences Massive data production in labs (sensors, robots, models ….) but also in farms (of huge interest for science) ✓ Big data : more variety than volume ✓ space, time and scale issues Data silos, poorly documented Not easy to find, nor to access Different level of maturity of the practices about data (management, sharing, analysis)
  11. 11. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 E-infra conceptuel model to understand the ecosystem
  12. 12. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 Some of the gems Data repositories +/- open Data catalog : http://ring.ciard.net/ Resources catalog: semantics, metadata http://vest.agrisemantics.org http://agroportal.lirmm.fr/ http://agrisemantics.org/ GACS
  13. 13. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 How to analyze the technical ecosystem ? https://www.rd-alliance.org/sites/default/files/recommendation-jan-2017-v8.pdf
  14. 14. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 Implementation Status of key services https://eoscpilot.eu/content/erosa-position-paper Johannes Keizer, e-ROSA project
  15. 15. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 Current landscape: Challenges Technical challenges Generic Content-dependent (agri-food) Long-term preservation Data processing Authentication and access rights Data types …… Semantics - standards From genes to ecosytem Public and private stakeholders Registry of services …. Cultural challenges Community engagement and incentives Policies and regulation Sustainability and governance
  16. 16. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 Potential Governance and business model issues https://eoscpilot.eu/content/erosa-position-paper Johannes Keizer, e-ROSA project
  17. 17. From open science to technological considerations Vision
  18. 18. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 Common Patterns in Revolutionary Infrastructures and Data https://www.rd-alliance.org/sites/default/files/Common_Patterns_in_Revolutionising_Infrastructures- final.pdf
  19. 19. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 Vision paper : A collaborative and open system … … In the open science based knowledge system, researchers : ✓ openly collaborate with different societal stakeholders to further improve the functioning of the food system; ✓ deploy a systems approach including the impacts and consequences in the whole food systems in their research, not studying effects and disciplines in isolation; ✓ undertake fully data-driven research …. And also hypothesis-driven research; ✓ work impact-based, to place their research in the broader societal context and show what the implications of the research are. http://www.erosa.aginfra.eu/node/8
  20. 20. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 An e-infra that supports the Data flows and open science The agri-food sector is dealing with an increasing amount and variety of data due to: • The multidisciplinary, multiscale nature of agri-food science, which is adopting a more and more systemic approach; • The automation of data collection thanks to robots, sensors, etc., as well as new engineering tools such as in the omics field; • The development of new types of data sources: e.g. Internet of Things, citizen science, text-mining
  21. 21. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 But F.A.I.R is not necessary open Societal priorities imply the maximum of transparency and access to data; Business interests can support differing objectives Personal privacy concerns I want to protect my « know how »I want to know where it comes from I want to understand ….
  22. 22. 22 Services for the Research Data Lifecycle Processing & Analysis Data Management, Curation & Preservation Access, Deposition & Sharing Federation Services ● B2FIND (data) ● Marketplace (Services) ● Applications on Demand ● Federated HTC & Cloud Compute IaaS & PaaS ● Processing of sensitive data ● Jupyter Notebook ● Application DB (software & VM) ● B2DROP (data) ● B2Note (data) ● B2SHARE (data) ● DataHub ● Federated AAI. monitoring, accounting ● SLA and order Management ● Security incident response and policies ● Technical support & Training ● B2HANDLE ● B2SAFE ● European Certified Trusted Repository ● Thematic data analytics ● Scientific Workflow Management, Orchestration (DIRAC, PaaS Orchestrator) 1 2 3 4 Discover & Reuse
  23. 23. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 Semantic : the missing component of EOSC pilot and Hub
  24. 24. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 What we want! Helping all players in the food system to access information wherever and in which way ever it is stored and to process it in the way they want Considering our scattered ecosystem and multiple stakeholders, resources and culture
  25. 25. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 What we need Extensive and powerful shared semantics Performant and scalable triple stores An API factory that produces APIs which link to any back end and any front end A powerful dataset/information source discover/registration mechanism
  26. 26. High Level Architecture Multiple Frontends - Galaxy - R - Portals - D4Science - Excel - PDF - CMS Whatever people want to do Multiple Backends • SQL • Dataverse • CKAN • Text Whatever people want to do Temporary and permanent triple stores Shared Semantics (Agroportal - GACS- Maps of Standards – RING) V 3.0 APIs to link to all kind of backends APIs to link to all kind of front ends
  27. 27. Next steps Conclusion
  28. 28. Horizon 2020 research and innovation programme - grant agreement No 730988 RDA 11th, Berlin, IGAD pre-meeting, 03/20/18 Conclusion and next steps Work in progress : ✓ Technical architecture vision ✓ Roadmap Input needed from you Implementation opportunities ✓ EU and other
  29. 29. CONSORTIUM WWW.EROSA.AGINFRA.EU Thank you for your attention! odile.hologne@inra.fr @Holo_08 @H2020_eROSA

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