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D4Science experience: VREs for increasing the sharing and collaboration in the scientific communities

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Donatella Castelli's presentation at the eROSA Workshop “Towards Open Science in Agriculture & Food”, a side event to High Level conference on FOOD 2030, Plovdiv, Bulgaria (13/6/2018)

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D4Science experience: VREs for increasing the sharing and collaboration in the scientific communities

  1. 1. www.bluebridge-vres.eu D4Science experience: VREs for increasing the sharing and collaboration in the scientific communities Donatella Castelli, CNR-ISTI CNR-ISTI donatella.castelli@isti.cnr.it Towards Open Science in Agriculture & Food, 13 June 2018, Plovdiv
  2. 2. D4Science e-Infrastructure Elecronic platform operated by a responsible entity offering an open set of basic enabling services (including access to resources) to a distributed Community of Practice Data infrastructure “e-Infrastructure” offering services for colletion, deposition, storage, preservation, access, retrieval, analysis/mining/processing, publication, etc. D4Science Towards Open Science in Agriculture and Food, 13 June 2018, Plovdiv Serving Interdisciplinary & multifacets collaboration at the local, national, regional and international levels Serving knowledge generation processes - Access to heterogeneous, distribuited, across-domain data - Rich data mining, analysis and processing capabilities 2
  3. 3. Multiple served domains Towards Open Science in Agriculture and Food, 13 June 2018, Plovdiv 3 Marine scienceSocial Mining Agri-food Humanities PARTHENOS Environment 5100+ users in 44 countries
  4. 4. Multiple target stakeholders SMEs Educators& students Researchers Scientific authorities Citizens Towards Open Science in Agriculture and Food, 13 June 2018, Plovdiv 4
  5. 5. Leveraging others’ resources Enabling services, data mgmt services & own resources Existing providers Towards Open Science in Agriculture and Food, 13 June 2018, Plovdiv 5 WP S As-a-service provision “in the style of cloud” Third-party portals & applications
  6. 6. Virtual Research Environments Towards Open Science in Agriculture and Food, 13 June 2018, Plovdiv 6 VRE VRE VRE Distributed and dynamically created Web accessible environments tailored to specific operational needs • Tailored datasets, services, compute and storage resources • Collaboration support • Tailored regulating policies • Defined lifetime • Little cost of creation and operation VRE as-a-service
  7. 7. “Understanding how ecosystems of EU e-infrastructures can boost Blue Growth,” Brussels, 11 January 2017 7 • Support collaborative data analysis and experimentation via a secure and controlled data and workflow sharing • Manage heterogeneous data access policies • Implement Traceability and Reproducibility-Repeatability- Reusability Information objects can be • files, dataset, workflows, experiments, etc. • organized into folders Users can • share with selected users • disseminate via persistent public URLs Virtual workspace
  8. 8. Social networking is key to share information in e-Infrastructure D4Science offers a continuously updated list of events / news produced by users and applications User-shared News Application- shared News Share News Social Networking
  9. 9. • Experiments on Big Data • Sharing inputs and results • Save the provenance of experiments • Supports R-R-R of experiments WPS REST • Input/Out • Parameters • Provenance
  10. 10. Research workflow Towards Open Science in Agriculture and Food, 13 June 2018, Plovdiv 12
  11. 11. Blue Sectors related VREs Towards Open Science in Agriculture and Food, 13 June 2018, Plovdiv 13 WECAFC VRE: Support regional fishery management in collaboration with NOAA (through FIRMS) SDG-Indicators14.4.1 VRE: Built to support a FAO course on implementation and reporting of SDG Indicator 14.4.1 GRSF VRE: Rich global source of stocks and fisheries information providing access through UUIDs Protected Area Impact Maps VRE: visualize, analyze and report on a range of ecologically important seafloor features within MPA. To help countries to report on their CBD (Aichi Target 11) goals Aquaculture Atlas Generation VRE: generation and review of aquaculture maps for offshore fish farms and coastal ponds.
  12. 12. Agro-climatic and Economic Modelling Community Goal: prediction of short and long term agricultural yields, considering operational decisions and climate change AgroClimated Modelling VRE Data Access: AgrodDataCube (Fields, Crops, Soil, Weather) Data analytics: to share processes of interest, e.g. crop simulation models (WOFOST), crop phenology algos - Repeatability, Parallel execution Towards Open Science in Agriculture and Food, 13 June 2018, Plovdiv 14
  13. 13. Food Safety Risk Assessment Goal: to support emergency risk identification and assessment RAKIP & DEMETER VREs Data analytics to share models of interest, namely computational-intensive mathematical simulation routines to support risk assessments (e.g. predictive microbial modelling, quantitative microbial risk assessment) - Shared workspace and catalogue - Repeatability support, parallel execution Towards Open Science in Agriculture and Food, 13 June 2018, Plovdiv 15
  14. 14. Food Security Goal: maximize crop performance by selecting more adapted plant varieties to climate change Food Security VRE Data Access: INRA phenotyping data Data analytics: to share processes, e.g. plant height fitting (R), maïze ear detection (python), … (Jupyter) Social networking Towards Open Science in Agriculture and Food, 13 June 2018, Plovdiv 16
  15. 15. VREs (today) Towards Open Science in Agriculture and Food, 13 June 2018, Plovdiv 17 • 129 VREs • 55,000+ data analysis/month • 99.8 % availability
  16. 16. References / Links • D4Science Web Site: http://www.d4science.org • D4Science for developers: http://dev.d4science.org • Catalogue of Applications • https://www.gcube-system.org/catalogue-of-applications • Software Key Features • https://wiki.gcube-system.org/GCube_Features • Developer Guide • https://wiki.gcube-system.org/Developer%27s_Guide • FeatherWeightStack • https://wiki.gcube-system.org/Featherweight_Stack • SmartGears • https://wiki.gcube-system.org/SmartGears • gCube APIs • https://wiki.gcube-system.org/GCube_Application_Programming_Interface • Administration Guide • https://wiki.gcube-system.org/Administrator%27s_Guide Towards Open Science in Agriculture and Food, 13 June 2018, Plovdiv 18

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