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eROSA has received funding from the European
Union’s Horizon 2020 research and innovation
programme under grant agreement No 730988
E-infrastructure tools and services for
open agricultural sciences
First approach
Odile Hologne, INRA, Head of the department of scientific information
eROSA coordinator
Horizon 2020 research and innovation programme - grant agreement No 730988
4th RDA Europe Science workshop 25-26 April 2017
Background
e-ROSA: build a roadmap for an « e-
infrastructure for openscience in agriculture »
 18 months : jan 2017-june 2018
Aginfra+ : illustrate the value and potential of
a virtual research environment for the
domain of agriculture and food
 3 years : 2017-2019
Open data policy at INRA
http://datapartage.inra.fr
Quick overview
The data ecosystem
in agriculture and ag.
sciences
Horizon 2020 research and innovation programme - grant agreement No 730988
4th RDA Europe Science workshop 25-26 April 2017
Scientific Agricultural data ?
Different families :
• Omics
• Observation
• Social sciences, cohorts studies
• From genome to ecosystem
Horizon 2020 research and innovation programme - grant agreement No 730988
4th RDA Europe Science workshop 25-26 April 2017
Exemple : INRA RI and digital assets
Horizon 2020 research and innovation programme - grant agreement No 730988
4th RDA Europe Science workshop 25-26 April 2017
Data challenges in agricultural sciences
Massive data production in labs (sensors,
robots, models ….) but also in farms (of huge
interest for science)
 Big data : more variety than volume
Data silos, poorly documented
Not easy to find, nor to access
Different level of maturity of the practices
about data (management, sharing, analysis)
Horizon 2020 research and innovation programme - grant agreement No 730988
4th RDA Europe Science workshop 25-26 April 2017
Data practices
Drawings sources :
https://rd-alliance.org/plenary-meetings/fourth-
plenary/plenary-cartoons.html
Survey : Wheat data interoperability WG, RDA
https://www.rd-alliance.org/groups/wheat-data-
interoperability-wg.html
Horizon 2020 research and innovation programme - grant agreement No 730988
4th RDA Europe Science workshop 25-26 April 2017
http://www.erosa.aginfra.eu/sites/ero
sa_deliverables/D1.1.pdf
Horizon 2020 research and innovation programme - grant agreement No 730988
4th RDA Europe Science workshop 25-26 April 2017
From Excel sheets to predictive Information
system
https://www.slideshare.net/BigData_Europe/agrimetrics
Richard Tiffin, Agrimetrics (UK)
http://www.aginfra.eu/discover
http://www.aginfra.eu
1
AgINFRA/e-ROSA online map
First approach (not a result of the project in April
2017)
E-infrastructure,
EOSC
and Agricultural
sciences
Horizon 2020 research and innovation programme - grant agreement No 730988
4th RDA Europe Science workshop 25-26 April 2017
European open science cloud (EOSC)
From Jean Claude Burgelman – DG RTD
Agricultural sciences
Horizon 2020 research and innovation programme - grant agreement No 730988
4th RDA Europe Science workshop 25-26 April 2017
E-infra : an ecosystem of resources and services
▪ European Open Science Cloud
(EOSC)
▪ Integration and consolidation of e-
infrastructures
▪ Federation of existing research
infrastructures and scientific clouds
▪ Development of cloud-based
services for Open Science
▪ Connection of ESFRIs to the
EOSC
▪ European Data Infrastructure
(EDI)
▪ Development and deployment of
large-scale European HPC, data
and network infrastructure
13
Industry
Scientific
Users
Public Sector
European Open Science Cloud
European Data Infrastructure
Source: https://ec.europa.eu/digital-single-
market/en/%20european-cloud-initiative
Horizon 2020 research and innovation programme - grant agreement No 730988
4th RDA Europe Science workshop 25-26 April 2017
Resources and services : 1st approach
Data resources: management, storage, ….
Data discovery
Data interoperability
Data integration
Data processing and analysis
Data publication
FAIR data Data standardization
Distributed and Trusted data repositories
http://vest.agrisemantics.org
http://agroportal.lirmm.fr/
http://agrisemantics.org/
Galaxy, Taverna et Knime
semantics
Horizon 2020 research and innovation programme - grant agreement No 730988
4th RDA Europe Science workshop 25-26 April 2017
Focus on semantics
Horizon 2020 research and innovation programme - grant agreement No 730988
4th RDA Europe Science workshop 25-26 April 2017
Sustainability, Business model and governance
Define rules and principles
Technical requirement and sealed services
Find a sustainable business model
 free to use ? (public goods)
 fee, subscription ? (club goods)
Sustaining Scholarly Infrastructures through Collective Action: The lessons
that Olson can teach us
Cameron Neylon
bioRxiv 116756; doi: https://doi.org/10.1101/116756
Horizon 2020 research and innovation programme - grant agreement No 730988
4th RDA Europe Science workshop 25-26 April 2017
Some wishes or needs (personnal)
To be more focus on content than on
technical service
 vocabularies as a service
 PID as a service
 xxx…. as a service
To have a conceptual framework to describe
an e-infrastructure
 technical layers, services …
 set of principles, rules (FAIR Principles ?)
eROSA methodology
1
WP1: Ecosystem &
Community
CONSORTIUM
WWW.EROSA.AGINFRA.EU1
Thank you for your attention!

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4th RDA Europe Science Workshop - The e-ROSA project

  • 1. eROSA has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 730988 E-infrastructure tools and services for open agricultural sciences First approach Odile Hologne, INRA, Head of the department of scientific information eROSA coordinator
  • 2. Horizon 2020 research and innovation programme - grant agreement No 730988 4th RDA Europe Science workshop 25-26 April 2017 Background e-ROSA: build a roadmap for an « e- infrastructure for openscience in agriculture »  18 months : jan 2017-june 2018 Aginfra+ : illustrate the value and potential of a virtual research environment for the domain of agriculture and food  3 years : 2017-2019 Open data policy at INRA http://datapartage.inra.fr
  • 3. Quick overview The data ecosystem in agriculture and ag. sciences
  • 4. Horizon 2020 research and innovation programme - grant agreement No 730988 4th RDA Europe Science workshop 25-26 April 2017 Scientific Agricultural data ? Different families : • Omics • Observation • Social sciences, cohorts studies • From genome to ecosystem
  • 5. Horizon 2020 research and innovation programme - grant agreement No 730988 4th RDA Europe Science workshop 25-26 April 2017 Exemple : INRA RI and digital assets
  • 6. Horizon 2020 research and innovation programme - grant agreement No 730988 4th RDA Europe Science workshop 25-26 April 2017 Data challenges in agricultural sciences Massive data production in labs (sensors, robots, models ….) but also in farms (of huge interest for science)  Big data : more variety than volume Data silos, poorly documented Not easy to find, nor to access Different level of maturity of the practices about data (management, sharing, analysis)
  • 7. Horizon 2020 research and innovation programme - grant agreement No 730988 4th RDA Europe Science workshop 25-26 April 2017 Data practices Drawings sources : https://rd-alliance.org/plenary-meetings/fourth- plenary/plenary-cartoons.html Survey : Wheat data interoperability WG, RDA https://www.rd-alliance.org/groups/wheat-data- interoperability-wg.html
  • 8. Horizon 2020 research and innovation programme - grant agreement No 730988 4th RDA Europe Science workshop 25-26 April 2017 http://www.erosa.aginfra.eu/sites/ero sa_deliverables/D1.1.pdf
  • 9. Horizon 2020 research and innovation programme - grant agreement No 730988 4th RDA Europe Science workshop 25-26 April 2017 From Excel sheets to predictive Information system https://www.slideshare.net/BigData_Europe/agrimetrics Richard Tiffin, Agrimetrics (UK)
  • 11. First approach (not a result of the project in April 2017) E-infrastructure, EOSC and Agricultural sciences
  • 12. Horizon 2020 research and innovation programme - grant agreement No 730988 4th RDA Europe Science workshop 25-26 April 2017 European open science cloud (EOSC) From Jean Claude Burgelman – DG RTD Agricultural sciences
  • 13. Horizon 2020 research and innovation programme - grant agreement No 730988 4th RDA Europe Science workshop 25-26 April 2017 E-infra : an ecosystem of resources and services ▪ European Open Science Cloud (EOSC) ▪ Integration and consolidation of e- infrastructures ▪ Federation of existing research infrastructures and scientific clouds ▪ Development of cloud-based services for Open Science ▪ Connection of ESFRIs to the EOSC ▪ European Data Infrastructure (EDI) ▪ Development and deployment of large-scale European HPC, data and network infrastructure 13 Industry Scientific Users Public Sector European Open Science Cloud European Data Infrastructure Source: https://ec.europa.eu/digital-single- market/en/%20european-cloud-initiative
  • 14. Horizon 2020 research and innovation programme - grant agreement No 730988 4th RDA Europe Science workshop 25-26 April 2017 Resources and services : 1st approach Data resources: management, storage, …. Data discovery Data interoperability Data integration Data processing and analysis Data publication FAIR data Data standardization Distributed and Trusted data repositories http://vest.agrisemantics.org http://agroportal.lirmm.fr/ http://agrisemantics.org/ Galaxy, Taverna et Knime semantics
  • 15. Horizon 2020 research and innovation programme - grant agreement No 730988 4th RDA Europe Science workshop 25-26 April 2017 Focus on semantics
  • 16. Horizon 2020 research and innovation programme - grant agreement No 730988 4th RDA Europe Science workshop 25-26 April 2017 Sustainability, Business model and governance Define rules and principles Technical requirement and sealed services Find a sustainable business model  free to use ? (public goods)  fee, subscription ? (club goods) Sustaining Scholarly Infrastructures through Collective Action: The lessons that Olson can teach us Cameron Neylon bioRxiv 116756; doi: https://doi.org/10.1101/116756
  • 17. Horizon 2020 research and innovation programme - grant agreement No 730988 4th RDA Europe Science workshop 25-26 April 2017 Some wishes or needs (personnal) To be more focus on content than on technical service  vocabularies as a service  PID as a service  xxx…. as a service To have a conceptual framework to describe an e-infrastructure  technical layers, services …  set of principles, rules (FAIR Principles ?)