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EMBL-Sustainable Access to the World's Largest Biomolecular Data Resources

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This presentation was given as part of the EOSC Stakeholders Forum Scientific Community Workshop which gives the opportunity to prospective consumers and providers - from both the public and commercial sectors - to discuss needs and opportunities that should drive the definition of the EOSC service portfolio roadmap. This workshop aims to answer the following:

- What prospective needs and priorities do scientific communities have as consumers of the EOSC?
- How should EOSC facilitate the sharing of data, scientific outputs and services across national and organisational borders?

The workshop starts with a presentation of today’s state of play in federating resources and services to enable multi-disciplinary science and transnational access; it featured invited talks from representatives of digital infrastructures, research projects and communities and the long-tail of science. The workshop also involved representatives from both public and commercial organisations in their role as a service provider and service consumer. The workshop participants also took the opportunity to define a list of recommendations giving direction to the development and provisioning of the EOSC portfolio.

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EMBL-Sustainable Access to the World's Largest Biomolecular Data Resources

  1. 1. Sustainable access to the world’s largest biomolecular data resources EMBL Rupert Lueck | EMBL
  2. 2. What is EMBL • Europe’s centre of excellence in life science research, services and training • Intergovernmental organization • 26 member states • 237 M€ budget • Majority is core funding by MS to run big infrastructure • Competitive external funding 2 28/11/2018
  3. 3. 6 Sites in Europe – over 1700 people – 80+ nationalities 3 28/11/2018 Structural biology Hamburg Life sciences Heidelberg Epigenetics and neurobiology Rome Bioinformatics Hinxton EMBL-EBI Structural biology Grenoble Tissue biology and disease modelling Barcelona
  4. 4. Advanced training EMBL’s missions 4 28/11/2018 Basic research Services Technology development & transfer Integration of life science research
  5. 5. Trusted Data Resources & Analysis Services Literature & ontologies • Experimental Factor Ontology • Gene Ontology • BioStudies • Europe PMC Chemical biology • ChEBI • ChEMBL • SureChEMBL Molecular structures • Protein Data Bank in Europe • Electron Microscopy Data Bank Gene, protein & metabolite expression • Expression Atlas • Metabolights • PRIDE • RNA Central Protein sequences, families & motifs • InterPro • Pfam • UniProt Genes, genomes & variation • Ensembl • Ensembl Genomes • GWAS Catalog • Metagenomics portal Systems • BioModels • BioSamples • Enzyme Portal • IntAct • Reactome Molecular Archives • European Nucleotide Archive • European Variation Archive • European Genome-phenome Archive • ArrayExpress • EMBL-EBI data • EMBL-EBI services • EGI & ELIXIR AAI Hosted and operated by EMBL-EBI Reusable Data – Curated, standardised, integrated, freely available and sustainable Tools & Services https://www.ebi.ac.uk/services
  6. 6. Big Data - Big Demand 38 million requests to EMBL-EBI websites every day EMBL-EBI delivered 152 million jobs to its users in 2016 Scientists at over 3.2 million unique IP addresses use EMBL-EBI websites 200 petabytes of storage capacity in our data centres
  7. 7. History of cloud activities • Helix Nebula Science Cloud • Commercial Clouds • Embassy Cloud • GPU Cloud • EOSCpilot • EOSC-hub • EOSC-Life • ... 28/11/20187
  8. 8. EMBL Partnerships Integration of life science research in Europe 8 28/11/2018 Shaping science policy and strategy Fostering international collaboration

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