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Dr. Dario Lijtmaer - Data Sharing/Collaboration and Publication using BOLD

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An example of how to setup and manage a project on the BOLD system

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Dr. Dario Lijtmaer - Data Sharing/Collaboration and Publication using BOLD

  1. 1. Informatics Pre-Conference Workshop November 28, 2011Data Sharing/Collaboration and Publication using BOLD Darío LijtmaerMuseo Argentino de Ciencias Naturales “Bernardino Rivadavia”
  2. 2. Common challenges in (collaborative) barcoding projects1- Collaborators have different areas of expertise and roles in the project. Field work Molecular laboratory Taxonomy and voucher Data preparation analysis
  3. 3. Common challenges in (collaborative) barcoding projects1- Collaborators have different areas of expertise and roles in the project.2- Collaborators are often thousands of miles apart and interacting is notas easy as when two researchers work in the same institution. iBOL participating nations Distribution of CBOL institutions Localities of collection - ABBI
  4. 4. Common challenges in (collaborative) barcoding projects1- Collaborators have different areas of expertise and roles in the project.2- Collaborators are often thousands of miles apart and interacting is notas easy as when two researchers work in the same institution.The use of BOLD as a workbench to share data and interact can helpovercoming these challenges.
  5. 5. Barcoding the Birds of southern South AmericaObjective: to barcode the birds of the southern cone of South America MACN - Argentina UMSA - Bolivia CCDB - Canada
  6. 6. Barcoding the Birds of southern South America Field work in Tissue samples and Argentina vouchers at MACN and Bolivia UMSA and other Institutions Students Extraction and trained at amplification CCDB done at MACN Analysis Barcodes obtained performed together at CCDB
  7. 7. Collaboration and data sharing using BOLD: project users
  8. 8. Collaboration and data sharing using BOLD: project users
  9. 9. Collaboration and data sharing using BOLD: project users
  10. 10. Collaboration and data sharing using BOLD: project users
  11. 11. Collaboration and data sharing using BOLD: project users
  12. 12. Collaboration and data sharing using BOLD: project users
  13. 13. Collaboration and data sharing using BOLD: project users- Users need to have a BOLD account for me to be able to give themaccess to the project.
  14. 14. Collaboration and data sharing using BOLD: project users- Users need to have a BOLD account for me to be able to give themaccess to the project.- There are different degrees of access for the users.
  15. 15. Collaboration and data sharing using BOLD: project users
  16. 16. Collaboration and data sharing using BOLD
  17. 17. Collaboration and data sharing using BOLD
  18. 18. Collaboration and data sharing using BOLD
  19. 19. Collaboration and data sharing using BOLD
  20. 20. Collaboration and data sharing using BOLD
  21. 21. Collaboration and data sharing using BOLDAll unexpected results are checked for possible contamination ormisidentifications using BOLD C. pyrrophia P. torquata Possible contamination S. similis S. coerulescens Possible misidentification
  22. 22. Publication using BOLD: sending barcode sequences to GenBank
  23. 23. Publication using BOLD: sending barcode sequences to GenBank
  24. 24. Publication using BOLD: sending barcode sequences to GenBank
  25. 25. Publication using BOLD: sending barcode sequences to GenBank GenBank update channel: in BOLD v3.0 (beta) the curation of specimen and sequence records is coordinated with GenBank. Changes and updates made in BOLD are automatically sent to the GenBank staff so that the info is also modified in GenBank.
  26. 26. Publication using BOLD: bibliography submission
  27. 27. Publication using BOLD: bibliography submission
  28. 28. Publication using BOLD: bibliography submission
  29. 29. Making your project public
  30. 30. Making your project public
  31. 31. Making your project public
  32. 32. Informatics Pre-Conference Workshop November 28, 2011Data Sharing/Collaboration and Publication using BOLD Thank you very much! Darío Lijtmaer Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”

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