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BHL Technical UpdateWilliam UlateBHL US/UK Technical DirectorMarine Biological LaboratoryWoods Hole, MassachusettsMay 6-7,...
BHL Technical Update• Merge the BHL Australia website User Interfaceand the BHL-US/UK website Functionality• The Global Na...
BHL Technical Update• BHL AU-USome• The NSF GNA project• The NEH Art of Life project
BHL AU-USome(thanks to B.Crowley for the name)
BHL AU launch
2011 Usability Test• A list of key differences between user interfaces• Feedback from (17) users on their preferences• Usa...
BHL AU-USome (2012)Usability Test Report– Names– OCR– Illustrations– More information on Species– Book Viewer– Advanced Se...
BHL AU-USomeNew US/UK functionality since 2011Home page• Featured Collections• Browse by Collection• Links on top right of...
BHL AU-USomeArticle data model changes• In the book viewer, display a list of articles contained in the book/journalbeing ...
BHL AU-USome• Advantages– AU and US share IDs across portals!– Model has been kept synchronized• Disadvantages– US Code mo...
BHL AU-USomeProposed Timeline1. DESIGN PHASE – Aug. 6 –24.Input: Specifications/descriptions/notes about new features as s...
DESIGN PHASE
Relations between links and functions
Wireframes of Different Layers
Wireframes of Different Layers
Portal
Book Viewer
Article-level metadata• Disambiguating and locating structuralcomponents in the corpus• Done by automated and crowdsourced...
Articles in the BHL UI
Articles
Articles
Articles
PDF Generator
Topics with the TAG1. Making Tabs more prominent & choose the first one with data.2. Reinstate the "Contributing Library" ...
NSF GNA ProjectCitation Services in BHL
Citation services according to GNA• Fulfill the role of the global repository forbibliographic citations relating to biodi...
Citation services according to GNA• The Citebank platform contains theaggregated bibliographies of BHL, other digitallibra...
Where are we?• Articles– Extend BHL data model to store article metadata– Build process to harvest data from BioStor• Crea...
Where are we?• Link Out– Extend BHL data model to link out to titles and items in other systems– Create user interfaces fo...
Where are we?• Citation reconciliation– Augment existing BHL APIs to return article metadataand associated files– Respond ...
Where are we going?• Citation Reconciliation– merging citations with the same title; (forexample, an author publishing the...
Functional requirements for a citation repository• IMPORTING (Administrator)• IMPORTING (General User)• RECORD CREATION (G...
Global NamesOne year no-cost extension requested
Data Mining and Crowdsourcing the Identification and Descriptionof Natural History Illustrations from the Biodiversity Her...
What is Art of Life?• Grant given to Missouri Botanical Garden in St Louis,to work with Indianapolis Museum of Art andUniv...
5 Primary Objectives of Art of LifeObjective 1: Define an appropriate metadata schema for natural history illustrationsObj...
The Art of LifeData Mining and Crowdsourcing the Identification and Descriptionof Natural History Illustrations from the B...
Current status of Art of Life• Development of the algorithm is about 90% complete and willbe done by May 2013• Draft schem...
Current status of Art of Life• Algorithm – due to significant staff changes at the Indianapolis Museum ofArt the algorithm...
Current status of Art of Life• Held first Advisory Board meeting in January which was very successfuland received good fee...
Presentations on Art of Life• Biodiversity Informatics Standards Annual Conference, Beijing, China. Oct 2012, The Artof Li...
Macawhttp://macawup01.up.ac.za
Viewing Activity
Viewing Activity
Loading Activity
Uploading images via browser
Uploading images via browser
Reviewing Metadata
Reviewing Metadata
Uploading to the Archive• Need to get set up with an account atIA first• Account at IA needs access to the biodiversitycol...
Thank youWilliam UlateBHL US/UK Technical DirectorWilliam.Ulate@mobot.orgMarine Biological LaboratoryWoods Hole, Massachus...
BHL Technical Update (May 2013)
BHL Technical Update (May 2013)
BHL Technical Update (May 2013)
BHL Technical Update (May 2013)
BHL Technical Update (May 2013)
BHL Technical Update (May 2013)
BHL Technical Update (May 2013)
BHL Technical Update (May 2013)
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BHL Technical Update (May 2013)

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Technical Update showing advance according to what was presented a year ago.

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Transcript of "BHL Technical Update (May 2013)"

  1. 1. BHL Technical UpdateWilliam UlateBHL US/UK Technical DirectorMarine Biological LaboratoryWoods Hole, MassachusettsMay 6-7, 2013Institutional Council Meeting
  2. 2. BHL Technical Update• Merge the BHL Australia website User Interfaceand the BHL-US/UK website Functionality• The Global Names Architecture project (NationalScience Foundation)• The Art of Life: Data Mining and Crowdsourcingthe Identification and Descriptionof Natural History Illustrations from theBiodiversity Heritage Library (NationalEndowment for the Humanities)
  3. 3. BHL Technical Update• BHL AU-USome• The NSF GNA project• The NEH Art of Life project
  4. 4. BHL AU-USome(thanks to B.Crowley for the name)
  5. 5. BHL AU launch
  6. 6. 2011 Usability Test• A list of key differences between user interfaces• Feedback from (17) users on their preferences• Usability Test Notes and Survey Summary• Usability Test Report
  7. 7. BHL AU-USome (2012)Usability Test Report– Names– OCR– Illustrations– More information on Species– Book Viewer– Advanced Search
  8. 8. BHL AU-USomeNew US/UK functionality since 2011Home page• Featured Collections• Browse by Collection• Links on top right of main page– feedback, exports, members• Now Online stats box on main page• Recently Added view (never in BHL-AU )• Twitter feed integration• Blog integration• Donate/Mailing List buttons• Flickr images on home pageOther• Social Media (Like/Tweet) buttons• Advanced search interface• DOIs added to bibliography page for titles• Title variants in bibliography page for titles• Schema.org markup added• Darwins Library annotation viewer• Icon to "Add record to Mendeley library"
  9. 9. BHL AU-USomeArticle data model changes• In the book viewer, display a list of articles contained in the book/journalbeing viewed. Pick one and navigate to the start page.• Need a "landing page" for articles with article metadata.• Link to the book viewer, an external location (a PDF in another repository), ornothing.• Display Articles that match the search term in a new section of Searchresults.• Add an option to "View Record" or "View Article“.• Browsing should include articles related, not only titles.
  10. 10. BHL AU-USome• Advantages– AU and US share IDs across portals!– Model has been kept synchronized• Disadvantages– US Code modified since AU launched– AU didn’t incorporate certain functionality
  11. 11. BHL AU-USomeProposed Timeline1. DESIGN PHASE – Aug. 6 –24.Input: Specifications/descriptions/notes about new features as soon as possible.Outcome: A full suite of designs, that incorporate comments from the 2011usability survey and incorporating any new features that you have planned or arealready building.2. COMMENT AND RESPONSE PHASE – Aug. 24 – Sep. 14.Input: Comments to the suites of designs.Outcome: Comments and responses to comments3. FINAL SIGN OFF – Sep. 21Output: The full suite of designs signed off by September 21, packaged, filestransferred across to MOBOT.4. Simon Sherrin VISIT TO Saint Louis, MO – Oct. 1 – 22.Output: BHL US codebase adapted to incorporate new designs.5. NEW DESIGN IN PRODUCTION – . Mar. 28
  12. 12. DESIGN PHASE
  13. 13. Relations between links and functions
  14. 14. Wireframes of Different Layers
  15. 15. Wireframes of Different Layers
  16. 16. Portal
  17. 17. Book Viewer
  18. 18. Article-level metadata• Disambiguating and locating structuralcomponents in the corpus• Done by automated and crowdsourced means– Thanks Rod Page! Welcome others!• Greatly increases semantic value of thedataset• Addressing important – makes dataaddressable and thus linkableChapter-level metadataTreatment-level metadataPart-level metadata
  19. 19. Articles in the BHL UI
  20. 20. Articles
  21. 21. Articles
  22. 22. Articles
  23. 23. PDF Generator
  24. 24. Topics with the TAG1. Making Tabs more prominent & choose the first one with data.2. Reinstate the "Contributing Library" in the book viewer.3. Too many Volumes...4. Lists are too long.5. Assign DOIs to articles.6. Citations that link to no content.7. PDFs are too big
  25. 25. NSF GNA ProjectCitation Services in BHL
  26. 26. Citation services according to GNA• Fulfill the role of the global repository forbibliographic citations relating to biodiversity.• Provide an open environment for sharing anddisseminating citations that suit taxonomists(series, volumes, articles, pages, and treatments. ).• Coming from multiple sources, raw citations arenot standardized and reconciliation services mustbe provided to map variant forms together.
  27. 27. Citation services according to GNA• The Citebank platform contains theaggregated bibliographies of BHL, other digitallibraries, publishers, institutional repositories,and contributed bibliographies from specialistgroups.• Citebank is built from the open-sourcepublishing framework Drupal and includescommunity-authored components for themanagement of bibliographic citations.
  28. 28. Where are we?• Articles– Extend BHL data model to store article metadata– Build process to harvest data from BioStor• Create user interfaces for adding article metadata andassociated files– Define functional requirements– Define process flow for adding article metadata andassociated files– Implement UI changes• Change BHL UI to accommodate article search• Change BHL UI to accommodate article display (TOC)
  29. 29. Where are we?• Link Out– Extend BHL data model to link out to titles and items in other systems– Create user interfaces for adding links out to titles & items in othersystems– Adjust BHL web display to show links out to titles & items in othersystems• Name-finding Improvements– Enhance name finding algorithms– Review changes to BHL data model to accommodate enhancements– Review changes to BHL UI to accommodate enhancements
  30. 30. Where are we?• Citation reconciliation– Augment existing BHL APIs to return article metadataand associated files– Respond to requests for improvementsfrom ZooBank & IPNI & Index Fungorum
  31. 31. Where are we going?• Citation Reconciliation– merging citations with the same title; (forexample, an author publishing the next segmentwith the same title or the same title over andover)• Crowdsource corrections and contributions– Consider expanding security (login user accounts)
  32. 32. Functional requirements for a citation repository• IMPORTING (Administrator)• IMPORTING (General User)• RECORD CREATION (General User)• RECORD EDITING (General User)• USER MANAGEMENT (Administrator)• BROWSE (General User)• CITATION TYPES• OAI HARVESTING• SPECIFICATIONS FOR DATA PROVIDERS PAGE• CONTRIBUTORS PAGE• REPORTING• GLOBAL UPDATES (Administrator)• RELATIONSHIPS BETWEEN CONTENT FILES AND CITATIONS• FIELDS
  33. 33. Global NamesOne year no-cost extension requested
  34. 34. Data Mining and Crowdsourcing the Identification and Descriptionof Natural History Illustrations from the Biodiversity Heritage LibraryObjective 1: Define an appropriate metadata schema for natural historyillustrations, enabling capture of comprehensive scientific, thematic, anddescriptive data;Objective 2: Build software tools to automatically identify illustrations in theBHL corpus using various files and characteristics to determine location andplacement of any type of visual resource;Objective 3: Enhance existing tools to enable the initial sorting, viewing, andediting of these identified visual resources;Objective 4: Integrate the Steve.museum application and Flickr APIs to enablea community of users to edit descriptive metadata for the illustrationsidentified through automated means;Objective 5: Commit born-digital descriptive metadata generated by usersinto BHL’s preservation system, based on Fedora Commons..The Art of Life
  35. 35. What is Art of Life?• Grant given to Missouri Botanical Garden in St Louis,to work with Indianapolis Museum of Art andUniversity of Colorado Boulder.• Funded by National Endowment for the Humanities• With support of staff from BHL (SIL)• Runs May 2012-April 2014
  36. 36. 5 Primary Objectives of Art of LifeObjective 1: Define an appropriate metadata schema for natural history illustrationsObjective 2: Build software tools to automatically identify illustrations in the BHL corpusObjective 3: Enhance existing tools to enable the initial sorting, viewing, and editing of theseidentified visual resources.Objective 4: Integrate tagging applications to enable a community of users to edit descriptivemetadata for the illustrationsObjective 5: Integrate the descriptive metadata generated by users back into BHL portal both foraccess and preservation
  37. 37. The Art of LifeData Mining and Crowdsourcing the Identification and Descriptionof Natural History Illustrations from the Biodiversity Heritage LibraryObjective 1: Define an appropriate metadata schema for natural historyillustrations, enabling capture of comprehensive scientific, thematic, anddescriptive data;Objective 2: Build software tools to automatically identify illustrations in theBHL corpus using various files and characteristics to determine location andplacement of any type of visual resource;Objective 3: Enhance existing tools to enable the initial sorting, viewing, andediting of these identified visual resources;Objective 4: Integrate the Steve.museum application and Flickr APIs to enablea community of users to edit descriptive metadata for the illustrationsidentified through automated means;Objective 5: Commit born-digital descriptive metadata generated by usersinto BHL’s preservation system, based on Fedora Commons..
  38. 38. Current status of Art of Life• Development of the algorithm is about 90% complete and willbe done by May 2013• Draft schema for describing natural history illustrationsavailable for public review http://tinyurl.com/9hm7nsb• Classifier tool – in progress
  39. 39. Current status of Art of Life• Algorithm – due to significant staff changes at the Indianapolis Museum ofArt the algorithm work was delayed this spring but we are now in the finalstages of the algorithm work where we are identifying which of the 4algorithms that were developed are performing most effectively on thetest set. We are working the staff at MBL Woods Hole to work outprocedures for running the algorithm across the entire corpus.• Classifier – Joel Richard has modified the Macaw tool that he developedfor paginating and it will be used by BHL staff to do some basicclassification of page images (e.g. photos, drawings, maps, etc) before thepages are sent to tagging environments such as flickr and Wikimediacommons
  40. 40. Current status of Art of Life• Held first Advisory Board meeting in January which was very successfuland received good feedback.• Members include:– Doug Holland, Director, Missouri Botanical Garden Library– Dr. Hong Cui, Assistant Professor, University of Arizona– Dr. David Kohn, Director and General Editor, Darwin Manuscripts Project, AmericanMuseum of Natural History– Charles Miller, Chief Information Officer, Missouri Botanical Garden– Nancy Gwinn, Director, Smithsonian Institution Libraries– Robert Guralnick, Associate Professor at the University of Colorado at Boulder– Betty Smocovitis, Professor of Zoology and History at the University of Florida
  41. 41. Presentations on Art of Life• Biodiversity Informatics Standards Annual Conference, Beijing, China. Oct 2012, The Artof Life Schema: describing and providing access to natural history illustrations from theBiodiversity Heritage Library (BHL), William Ulate, Trish Rose-Sandler, Gaurav Vaidya,Robert Guralnick• Museums and the Web conference, Portland, OR Apr 2013, More than just a prettypicture: improving the discoverability of illustrations in the Biodiversity Heritage Library(BHL), Gilbert Borrego, Grace Costantino, Bianca Crowley, Kyle Jaebker, Trish Rose-Sandler• Visual Resources Association conference, Providence, RI, Apr 2013 , A Case Study of TheArt of Life: Data Mining and Crowdsourcing the Identification and Description of NaturalHistory Illustrations from the Biodiversity Heritage Library, Trish Rose-Sandler• St Louis Regional Library Network (SLRLN) Tech Expo, St Louis MO Mar 2013, The Art ofLife: Data mining and crowdsourcing the identification an description of natural historyillustrations from the Biodiversity Heritage Library Trish Rose-Sandler
  42. 42. Macawhttp://macawup01.up.ac.za
  43. 43. Viewing Activity
  44. 44. Viewing Activity
  45. 45. Loading Activity
  46. 46. Uploading images via browser
  47. 47. Uploading images via browser
  48. 48. Reviewing Metadata
  49. 49. Reviewing Metadata
  50. 50. Uploading to the Archive• Need to get set up with an account atIA first• Account at IA needs access to the biodiversitycollection• Uploading of completed items is done viascheduled job or the command line
  51. 51. Thank youWilliam UlateBHL US/UK Technical DirectorWilliam.Ulate@mobot.orgMarine Biological LaboratoryWoods Hole, MassachusettsMay 6-7, 2013Institutional Council Meeting
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