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Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
Sage Bionetworks - Intro for Open Source Pharma Workshop
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Sage Bionetworks - Intro for Open Source Pharma Workshop

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Sage Bionetworks - Intro for Open Source Pharma Workshop

Sage Bionetworks - Intro for Open Source Pharma Workshop

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Transcript

  • 1. http://sagebase.org
  • 2. can we attract teams to predict odds of breast cancer relapse from existing public data?
  • 3. code sharing a prerequisite. http://synapse.org
  • 4. accuracy of model jumped three orders of magnitude in nine days.
  • 5. 6 76% accurate.
  • 6. 7 (already generating new incentives)
  • 7. can we increase reuse and replication of the results?
  • 8. 21 february 2013 17 april 2013 ongoing...
  • 9. http://synapse.org
  • 10. SHOW ME THE CODE!
  • 11. ...
  • 12. can we increase research outputs of “big science”?
  • 13. http://synapse.org
  • 14. 18NPG papers 68core projects 248researchers 28institutions 1070datasets 1723results TCGA Pan-Cancer Consortium
  • 15. can we increase accuracy of “knowledge”?
  • 16. CRC Subtyping Consortium
  • 17. A B C D E F 1 2 3 4 5 6 groups datasets subtypes
  • 18. A B C D E F 1 2 3 4 5 6 G ...
  • 19. can we develop our own open data?
  • 20. http://sagebridge.org

Ă—