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NCAR Open Access Week

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    NCAR Open Access Week - Presentation Transcript

    1. Friday, October 23, 2009
    2. pick the most likely scenario circa 1990: (apologies to Jamie Boyle) Friday, October 23, 2009
    3. Friday, October 23, 2009
    4. Friday, October 23, 2009
    5. Friday, October 23, 2009
    6. “...we don’t ask what the incentive is for the electrons to leave home. we say that the current results from an emergent property of the system, which we call induction.” eben moglen Friday, October 23, 2009
    7. “...we don’t ask what the incentive is for the electrons to leave home. we say that the current results from an emergent property of the system, which we call induction.” The question we ask is ‘what’s the resistance of the wire?’ eben moglen Friday, October 23, 2009
    8. Friday, October 23, 2009
    9. Friday, October 23, 2009
    10. less likely in reality than the theoretical impossibilities of free software and wikipedia. Friday, October 23, 2009
    11. 1. Happy Open Access Week! Friday, October 23, 2009
    12. 1. Happy Open Access Week! (we’re a long, long, long way from being done) Friday, October 23, 2009
    13. 8 years after Budapest... Friday, October 23, 2009
    14. why is this still so hard? Friday, October 23, 2009
    15. “Innovation makes enemies of all those who prospered under the old regime, and only lukewarm support is forthcoming from those who would prosper under the new. Their support is indifferent partly from fear and partly because they are generally incredulous, never really trusting new things unless they have tested them by experience.” Friday, October 23, 2009
    16. “Innovation makes enemies of all those who prospered under the old regime, and only lukewarm support is forthcoming from those who would prosper under the new. Their support is indifferent partly from fear and partly because they are generally incredulous, never really trusting new things unless they have tested them by experience.” (machiavelli) Friday, October 23, 2009
    17. the balance of power is shifting to the user of content. Friday, October 23, 2009
    18. Friday, October 23, 2009
    19. media company response: adjust the physical media. force the cd format. disable new digital formats. protect the business model. Friday, October 23, 2009
    20. Friday, October 23, 2009
    21. after all, it’s your music. Friday, October 23, 2009
    22. now a computer company dominates the music industry. Friday, October 23, 2009
    23. rip. mix. burn. after all, it’s your knowledge. Friday, October 23, 2009
    24. self archiving Friday, October 23, 2009
    25. OA publishing Friday, October 23, 2009
    26. both roads are too concerned with the publishing, not the user... Friday, October 23, 2009
    27. after all, it’s her knowledge. Friday, October 23, 2009
    28. 2. the users are changing the system for us. Friday, October 23, 2009
    29. registration certification dissemination preservation Friday, October 23, 2009
    30. registration certification dissemination preservation Friday, October 23, 2009
    31. Friday, October 23, 2009
    32. registration certification dissemination preservation Friday, October 23, 2009
    33. Friday, October 23, 2009
    34. someone’s going to crack distributed peer review. Friday, October 23, 2009
    35. Friday, October 23, 2009
    36. 3. there is plenty of opportunity out there for scholarly societies and publishers... Friday, October 23, 2009
    37. Friday, October 23, 2009
    38. integration annotation federation Friday, October 23, 2009
    39. 103 databases - just molecular biology Friday, October 23, 2009
    40. better answers through better formats: mesh: pyramidal neurons select ?gene_name ?process_name where pubmed: journal articles { PropertyValue(?pubmed_record, ?p, mesh:D017966) PropertyValue(?article, sc:identified_by_pmid , ?pubmed_record) PropertyValue(?gene_record, sc:describes_gene_or_gene_product_mentioned_by, ?article) SubClassOf(?protein, some(ro:has_function, some(ro:realized_as, ?process))) SubClassOf(?process, or(go:GO_0007166, some(ro:part_of, go:GO_0007166)) entrez gene: genes SubClassOf(?protein, some(sc:is_protein_gene_product_of_dna_described_by,?gene_record)) Annotation(?gene_record,rdfs:label,{?gene_name}) } Annotation(?process,rdfs:label,?process_name) go: signal transduction Friday, October 23, 2009
    41. DRD1, 1812 adenylate cyclase activation ADRB2, 154 adenylate cyclase activation ADRB2, 154 arrestin mediated desensitization of G-protein coupled receptor protein signaling pathway DRD1IP, 50632 dopamine receptor signaling pathway DRD1, 1812 dopamine receptor, adenylate cyclase activating pathway DRD2, 1813 dopamine receptor, adenylate cyclase inhibiting pathway GRM7, 2917 G-protein coupled receptor protein signaling pathway GNG3, 2785 G-protein coupled receptor protein signaling pathway GNG12, 55970 G-protein coupled receptor protein signaling pathway DRD2, 1813 G-protein coupled receptor protein signaling pathway ADRB2, 154 G-protein coupled receptor protein signaling pathway CALM3, 808 G-protein coupled receptor protein signaling pathway HTR2A, 3356 G-protein coupled receptor protein signaling pathway DRD1, 1812 G-protein signaling, coupled to cyclic nucleotide second messenger SSTR5, 6755 G-protein signaling, coupled to cyclic nucleotide second messenger MTNR1A, 4543 G-protein signaling, coupled to cyclic nucleotide second messenger CNR2, 1269 G-protein signaling, coupled to cyclic nucleotide second messenger HTR6, 3362 G-protein signaling, coupled to cyclic nucleotide second messenger GRIK2, 2898 glutamate signaling pathway GRIN1, 2902 glutamate signaling pathway GRIN2A, 2903 glutamate signaling pathway GRIN2B, 2904 glutamate signaling pathway ADAM10, 102 integrin-mediated signaling pathway GRM7, 2917 negative regulation of adenylate cyclase activity LRP1, 4035 negative regulation of Wnt receptor signaling pathway ADAM10, 102 Notch receptor processing ASCL1, 429 Notch signaling pathway HTR2A, 3356 serotonin receptor signaling pathway ADRB2, 154 transmembrane receptor protein tyrosine kinase activation (dimerization) PTPRG, 5793 transmembrane receptor protein tyrosine kinase signaling pathway EPHA4, 2043 transmembrane receptor protein tyrosine kinase signaling pathway NRTN, 4902 transmembrane receptor protein tyrosine kinase signaling pathway CTNND1, 1500 Wnt receptor signaling pathway ` Friday, October 23, 2009
    42. turn ugly query code into a link http://hcls1.csail.mit.edu:8890/sparql/?query=prefix%20go%3A%20%3Chttp%3A%2F%2Fpurl.org%2Fobo%2Fowl%2FGO%23%3E %0Aprefix%20rdfs%3A%20%3Chttp%3A%2F%2Fwww.w3.org%2F2000%2F01%2Frdf-schema%23%3E%0Aprefix%20owl%3A %20%3Chttp%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23%3E%0Aprefix%20mesh%3A%20%3Chttp%3A%2F%2Fpurl.org %2Fcommons%2Frecord%2Fmesh%2F%3E%0Aprefix%20sc%3A%20%3Chttp%3A%2F%2Fpurl.org%2Fscience%2Fowl %2Fsciencecommons%2F%3E%0Aprefix%20ro%3A%20%3Chttp%3A%2F%2Fwww.obofoundry.org%2Fro%2Fro.owl%23%3E%0A %0Aselect%20%3Fgenename%20%3Fprocessname%0Awhere%0A%7B%20%20graph%20%3Chttp%3A%2F%2Fpurl.org %2Fcommons%2Fhcls%2Fpubmesh%3E%0A%20%20%20%20%20%7B%20%3Fpaper%20%3Fp%20mesh%3AD017966%20.%0A %20%20%20%20%20%20%20%3Farticle%20sc%3Aidentified_by_pmid%20%3Fpaper.%0A%20%20%20%20%20%20%20%3Fgene %20sc%3Adescribes_gene_or_gene_product_mentioned_by%20%3Farticle.%0A%20%20%20%20%20%7D%0A%20%20%20graph %20%3Chttp%3A%2F%2Fpurl.org%2Fcommons%2Fhcls%2Fgoa%3E%0A%20%20%20%20%20%7B%20%3Fprotein%20rdfs %3AsubClassOf%20%3Fres.%0A%20%20%20%20%20%20%20%3Fres%20owl%3AonProperty%20ro%3Ahas_function.%0A %20%20%20%20%20%20%20%3Fres%20owl%3AsomeValuesFrom%20%3Fres2.%0A %20%20%20%20%20%20%20%3Fres2%20owl%3AonProperty%20ro%3Arealized_as.%0A %20%20%20%20%20%20%20%3Fres2%20owl%3AsomeValuesFrom%20%3Fprocess.%0A%20%20%20graph%20%3Chttp%3A%2F %2Fpurl.org%2Fcommons%2Fhcls%2F20070416%2Fclassrelations%3E%0A%20%20%20%20%20%7B%7B%3Fprocess%20%3Chttp %3A%2F%2Fpurl.org%2Fobo%2Fowl%2Fobo%23part_of%3E%20go%3AGO_0007166%7D%0A%20%20%20%20%20%20%20union %0A%20%20%20%20%20%20%7B%3Fprocess%20rdfs%3AsubClassOf%20go%3AGO_0007166%20%7D%7D%0A %20%20%20%20%20%20%20%3Fprotein%20rdfs%3AsubClassOf%20%3Fparent.%0A%20%20%20%20%20%20%20%3Fparent %20owl%3AequivalentClass%20%3Fres3.%0A%20%20%20%20%20%20%20%3Fres3%20owl%3AhasValue%20%3Fgene.%0A %20%20%20%20%20%20%7D%0A%20%20%20graph%20%3Chttp%3A%2F%2Fpurl.org%2Fcommons%2Fhcls%2Fgene%3E%0A %20%20%20%20%20%7B%20%3Fgene%20rdfs%3Alabel%20%3Fgenename%20%7D%0A%20%20%20graph%20%3Chttp%3A %2F%2Fpurl.org%2Fcommons%2Fhcls%2F20070416%3E%0A%20%20%20%20%20%7B%20%3Fprocess%20rdfs%3Alabel %20%3Fprocessname%7D%0A%7D&format=&maxrows=50 Friday, October 23, 2009
    43. Friday, October 23, 2009
    44. Friday, October 23, 2009
    45. what’s in a name? Friday, October 23, 2009
    46. Friday, October 23, 2009
    47. Friday, October 23, 2009
    48. integration annotation federation Friday, October 23, 2009
    49. Friday, October 23, 2009
    50. espresso coffee cafe kopi cafezinho latte koffee mocha americano Friday, October 23, 2009
    51. converge on common names. “coffee” “cafe” http://ontology.foo.org/1234567 “kopi” Friday, October 23, 2009
    52. Shakespeare: not a semantics guy. Friday, October 23, 2009
    53. Friday, October 23, 2009
    54. integration annotation federation Friday, October 23, 2009
    55. Friday, October 23, 2009
    56. translation from people, who tell stories, to the web of data and search engines Friday, October 23, 2009
    57. 4. lots of legal resistance in the wire. Friday, October 23, 2009
    58. © in relation to data... Friday, October 23, 2009
    59. category errors Friday, October 23, 2009
    60. Friday, October 23, 2009
    61. Friday, October 23, 2009
    62. Friday, October 23, 2009
    63. Friday, October 23, 2009
    64. Friday, October 23, 2009
    65. what can you do? 1. lead the way (again). 2. solve locally, share globally. 3. fund the library as infrastructure. Friday, October 23, 2009
    66. Friday, October 23, 2009
    67. incrementalism in information is powerful. but it can always be disrupted. Friday, October 23, 2009
    68. Friday, October 23, 2009
    69. Friday, October 23, 2009
    70. Friday, October 23, 2009
    71. Friday, October 23, 2009
    72. Friday, October 23, 2009
    73. “i propose the seeming paradox that in science, private property is established by having its substance freely given to others…” Merton Friday, October 23, 2009
    74. thank you john d. and catherine t. macarthur foundation ewing marion kauffman foundation chdi foundation omidyar network nike, inc. best buy, inc. yahoo!, inc. mountain equipment corporation sergey brin and anne wojcicki Friday, October 23, 2009
    75. 22 october 2009 Friday, October 23, 2009

    + john wilbanksjohn wilbanks, 1 month ago

    custom

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